IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1188	 52.54	0	1351781..1352233	+	150	74311805	ntpA	SSON_1276	-	dATP pyrophosphohydrolase
1189	 52.23	0	1352262..1353002	+	246	74311806	yebC	SSON_1277	-	hypothetical protein
1190	 54.98	0	1353037..1353558	+	173	74311807	ruvC	SSON_1278	-	Holliday junction resolvase
1191	 43.78	-1	1353560..1354162	-	200	161986538	yebB	SSON_1279	-	hypothetical protein
1192	 52.94	0	1354440..1355051	+	203	74311809	ruvA	SSON_1280	-	Holliday junction DNA helicase motor protein
1193	 53.21	0	1355060..1356070	+	336	74311810	ruvB	SSON_1281	-	Holliday junction DNA helicase B
1194	 51.15	0	1356217..1357002	-	261	74311811	znuB	SSON_1282	-	high-affinity zinc transporter membrane component
1195	 49.21	0	1356999..1357754	-	251	74311812	znuC	SSON_1283	-	high-affinity zinc transporter ATPase
1196	 49.20	0	1357833..1358765	+	310	161986537	znuA	SSON_1284	-	high-affinity zinc transporter periplasmic component
1197	 52.76	0	1358781..1360103	+	440	161986536	yebA	SSON_1285	-	hypothetical protein
1198	 50.93	0	1360223..1361194	+	323	74311815	msbB	SSON_1286	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
1199	 37.81	-2	1361414..1362709	-	431	74311816	-	SSON_1287	-	hypothetical protein
1200	 54.37	0	1362755..1363258	-	167	74311817	-	SSON_1288	-	IS1 ORF
1201	 39.99	-2	1363481..1365133	-	550	74311818	-	SSON_1289	-	putative alpha-mannosidase
1202	 37.29	-2	1365170..1367038	-	622	74311819	-	SSON_1290	-	hypothetical protein
1203	 34.58	-2	1367127..136