IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1177	 51.28	0	1341140..1341412	+	90	74311794	-	SSON_1265	-	IS2 orf1
1178	 55.19	0	1341370..1342275	+	301	161986540	-	SSON_1266	-	insertion element IS2 transposase InsD
1179	 46.53	-1	1342392..1342694	+	100	74311796	-	SSON_1267	-	IS600 ORF1
1180	 54.17	0	1342857..1343360	-	167	74311797	-	SSON_1268	-	IS1 ORF
1181	 51.96	0	1343612..1344325	+	237	74311798	-	SSON_1269	-	IS600 ORF2
1182	 53.56	0	1344353..1345306	+	317	74311799	-	SSON_1270	-	putative phage tail fiber protein
1183	 52.56	0	1345257..1345880	+	207	74311800	-	SSON_1271	-	hypothetical protein
1184	 46.92	-1	1346060..1347811	-	583	74311801	ipaH_2	SSON_1272	-	invasion plasmid antigen
1185	 44.18	-1	1348412..1348660	-	82	74311802	-	SSON_1273	-	hypothetical protein
1186	 52.91	0	1349015..1349581	-	188	161986539	yecD	SSON_1274	-	hypothetical protein
1187	 53.75	0	1349891..1351663	+	590	74311804	aspS	SSON_1275	-	aspartyl-tRNA synthetase
1188	 52.54	0	1351781..1352233	+	150	74311805	ntpA	SSON_1276	-	dATP pyrophosphohydrolase
1189	 52.23	0	1352262..1353002	+	246	74311806	yebC	SSON_1277	-	hypothetical protein
1190	 54.98	0	1353037..1353558	+	173	74311807	ruvC	SSON_1278	-	Holliday junction resolvase
1191	 43.78	-1	1353560..1354162	-	200	161986538	yebB	SSON_1279	-	hypothetical protein
1192	 52.94	0	1354440..1355051	+	203