IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1167	 43.30	-1	1328407..1328958	+	183	74311784	-	SSON_1253	-	putative resolvase
1168	 38.13	-2	1330868..1331242	+	124	74311785	-	SSON_1254	-	hypothetical protein
1169	 46.53	-1	1334146..1334448	+	100	74311786	-	SSON_1255	-	IS600 ORF1
1170	 52.10	0	1334589..1335302	+	237	74311787	-	SSON_1256	-	IS600 ORF2
1171	 48.68	0	1335299..1335487	-	62	74311788	-	SSON_1257	-	hypothetical protein
1172	 48.89	0	1337335..1338189	-	284	74311789	-	SSON_1260	-	antitermination protein Q
1173	 48.53	0	1338186..1338560	-	124	74311790	-	SSON_1261	-	putative crossover junction endodeoxyribonuclease
1174	 50.00	0	1338560..1338817	-	85	74311791	-	SSON_1262	-	putative bacteriophage protein
1175	 52.63	0	1339152..1339949	-	265	74311792	-	SSON_1263	-	IS21 ORF2
1176	 53.03	0	1339949..1341121	-	390	74311793	-	SSON_1264	-	IS21 ORF1
1177	 51.28	0	1341140..1341412	+	90	74311794	-	SSON_1265	-	IS2 orf1
1178	 55.19	0	1341370..1342275	+	301	161986540	-	SSON_1266	-	insertion element IS2 transposase InsD
1179	 46.53	-1	1342392..1342694	+	100	74311796	-	SSON_1267	-	IS600 ORF1
1180	 54.17	0	1342857..1343360	-	167	74311797	-	SSON_1268	-	IS1 ORF
1181	 51.96	0	1343612..1344325	+	237	74311798	-	SSON_1269	-	IS600 ORF2
1182	 53.56	0	1344353..1345306	+	317	74311799	-	SSON_1270	-	putati