IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1148	 53.56	0	1306855..1308456	+	533	74311765	tap	SSON_1232	-	methyl-accepting protein IV
1149	 53.77	0	1308475..1309335	+	286	74311766	cheR	SSON_1233	-	chemotaxis methyltransferase CheR
1150	 53.71	0	1309338..1310387	+	349	74311767	cheB	SSON_1234	-	chemotaxis-specific methylesterase
1151	 49.23	0	1310402..1310791	+	129	74311768	cheY	SSON_1235	-	chemotaxis regulatory protein CheY
1152	 53.33	0	1310802..1311446	+	214	74311769	cheZ	SSON_1236	-	chemotaxis regulator CheZ
1153	 52.42	0	1312131..1312544	-	137	74311770	-	SSON_1237	-	hypothetical protein
1154	 54.37	0	1312829..1313332	+	167	74311771	-	SSON_1238	-	IS1 ORF
1155	 50.60	0	1313343..1313927	-	194	74311772	-	SSON_1239	-	putative transposase
1156	 54.42	0	1314044..1315015	+	323	74311773	flhB	SSON_1240	-	flagellar biosynthesis protein FlhB
1157	 52.85	0	1316621..1318357	-	578	74311774	argS	SSON_1242	-	arginyl-tRNA synthetase
1158	 49.91	0	1318567..1319139	+	190	74311775	yecM	SSON_1243	-	hypothetical protein
1159	 52.07	0	1319153..1319899	+	248	74311776	cutC	SSON_1244	-	copper homeostasis protein CutC
1160	 47.50	0	1320287..1321387	+	366	74311777	yecK	SSON_1245	-	putative cytochrome C-type protein
1161	 46.20	-1	1321578..1321880	+	100	74311778	-	SSON_1246	-	IS600 ORF1
1162	 51.96	0	1322021..1322734	+	237	74311779	-	SSON_1247	-	IS600 ORF2
1163	 51.35	0	1322817..1325108	+	763