IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1136	 50.56	0	1294962..1295762	+	266	74311753	otsB	SSON_1220	-	trehalose-6-phosphate phosphatase
1137	 49.26	0	1295737..1297161	+	474	74311754	otsA	SSON_1221	-	trehalose-6-phosphate synthase
1138	 45.45	-1	1297168..1297596	-	142	74311755	yecG	SSON_1222	-	universal stress protein UspC
1139	 52.10	0	1298395..1299108	-	237	74311756	-	SSON_1223	-	IS600 ORF2
1140	 46.20	-1	1299249..1299551	-	100	74311757	-	SSON_1224	-	IS600 ORF1
1141	 46.39	-1	1299634..1299993	+	119	74311758	flhD	SSON_1225	-	transcriptional activator FlhD
1142	 48.88	0	1299996..1300574	+	192	74311759	flhC	SSON_1226	-	transcriptional activator FlhC
1143	 51.46	0	1300700..1301587	+	295	74311760	motA	SSON_1227	-	flagellar motor protein MotA
1144	 52.86	0	1301584..1302510	+	308	74311761	motB	SSON_1228	-	flagellar motor protein MotB
1145	 53.13	0	1302515..1304479	+	654	74311762	cheA	SSON_1229	-	chemotaxis protein CheA
1146	 51.59	0	1304500..1305003	+	167	74311763	cheW	SSON_1230	-	purine-binding chemotaxis protein
1147	 52.95	0	1305148..1306809	+	553	74311764	tar	SSON_1231	-	methyl-accepting chemotaxis protein II
1148	 53.56	0	1306855..1308456	+	533	74311765	tap	SSON_1232	-	methyl-accepting protein IV
1149	 53.77	0	1308475..1309335	+	286	74311766	cheR	SSON_1233	-	chemotaxis methyltransferase CheR
1150	 53.71	0	1309338..1310387	+	349	74311767	cheB	SSON_1234	-	chemotaxis-specific methylesterase
1151	 49.23	0	1310402..1310791	+	129