IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1103	 56.04	+1	1260846..1262144	+	432	74311719	dadA	SSON_1181	-	D-amino acid dehydrogenase small subunit
1104	 57.98	+1	1262154..1263224	+	356	74311720	dadX	SSON_1182	-	alanine racemase
1105	 52.45	0	1263611..1265347	-	578	161986543	ycgO	SSON_1183	-	potassium/proton antiporter
1106	 53.55	0	1265442..1266356	-	304	74311723	ldcA	SSON_1185	-	L,D-carboxypeptidase A
1107	 50.96	0	1266342..1267067	+	241	74311722	mltE	SSON_1184	-	murein transglycosylase E
1108	 50.61	0	1267069..1267803	-	244	74311724	ycgR	SSON_1186	-	hypothetical protein
1109	 54.51	0	1267971..1268225	+	84	74311725	ymgE	SSON_1187	-	transglycosylase associated protein
1110	 46.53	-1	1268277..1268579	+	100	74311726	-	SSON_1188	-	IS600 ORF1
1111	 52.10	0	1268720..1269433	+	237	74311727	-	SSON_1189	-	IS600 ORF2
1112	 52.10	0	1270168..1270881	-	237	74311728	-	SSON_1191	-	IS600 ORF2
1113	 46.20	-1	1271022..1271324	-	100	74311729	-	SSON_1192	-	IS600 ORF1
1114	 42.86	-2	1271890..1273464	+	524	74311730	fliC	SSON_1193	-	flagellar filament structural protein
1115	 54.44	0	1273629..1274348	+	239	74311731	fliA	SSON_1194	-	flagellar biosynthesis sigma factor
1116	 54.56	0	1274968..1275471	+	167	74311732	-	SSON_1196	-	IS1 ORF
1117	 49.69	0	1275810..1276610	+	266	74311733	fliY	SSON_1197	-	cystine transporter subunit
1118	 52.91	0	1276664..1277695	-	343