IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1090	 42.28	-2	1246867..1247235	+	122	74311706	ycgJ	SSON_1166	-	hypothetical protein
1091	 42.54	-2	1247343..1247744	-	133	74311707	ycgK	SSON_1167	-	hypothetical protein
1092	 41.90	-2	1247953..1248279	+	108	74311708	ycgL	SSON_1168	-	hypothetical protein
1093	 51.82	0	1248351..1249010	+	219	74311709	ycgM	SSON_1169	-	hypothetical protein
1094	 46.76	-1	1249102..1249548	+	148	161986544	ycgN	SSON_1170	-	hypothetical protein
1095	 54.37	0	1250337..1250840	-	167	74311711	-	SSON_1171	-	IS1 ORF
1096	 54.17	0	1251387..1251890	-	167	74311712	-	SSON_1172	-	IS1 ORF
1097	 48.33	0	1252592..1253011	+	139	74311713	umuD	SSON_1174	-	DNA polymerase V subunit UmuD
1098	 57.81	+1	1253521..1254717	-	398	74311714	-	SSON_1176	-	ISSfl2 ORF
1099	 52.54	0	1255775..1256305	-	176	74311715	dsbB	SSON_1177	-	disulfide bond formation protein B
1100	 52.79	0	1256451..1257992	-	513	74311716	nhaB	SSON_1178	-	sodium/proton antiporter
1101	 51.53	0	1258213..1258932	+	239	74311717	fadR	SSON_1179	-	fatty acid metabolism regulator
1102	 49.51	0	1258984..1260516	-	510	74311718	ycgB	SSON_1180	-	hypothetical protein
1103	 56.04	+1	1260846..1262144	+	432	74311719	dadA	SSON_1181	-	D-amino acid dehydrogenase small subunit
1104	 57.98	+1	1262154..1263224	+	356	74311720	dadX	SSON_1182	-	alanine racemase
1105	 52.45	0	1263611..1265347	-	578