IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1070	 49.39	0	1225868..1227094	+	408	74311686	pepT	SSON_1145	-	peptidase T
1071	 53.40	0	1227143..1228273	-	376	74311687	ycfD	SSON_1146	-	hypothetical protein
1072	 51.33	0	1228340..1229800	-	486	74311688	phoQ	SSON_1147	-	sensor protein PhoQ
1073	 46.88	-1	1229800..1230471	-	223	74311689	phoP	SSON_1148	-	DNA-binding transcriptional regulator PhoP
1074	 52.74	0	1230639..1232009	-	456	74311690	purB	SSON_1149	-	adenylosuccinate lyase
1075	 57.17	+1	1232013..1232654	-	213	74311691	ycfC	SSON_1150	-	hypothetical protein
1076	 53.48	0	1232690..1233796	-	368	161986546	trmU	SSON_1151	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
1077	 49.35	0	1233850..1234311	-	153	74311693	-	SSON_1152	-	putative phosphohydrolase
1078	 51.76	0	1234321..1234944	-	207	74311694	ymfC	SSON_1153	-	23S rRNA pseudouridine synthase E
1079	 50.12	0	1235146..1236396	+	416	74311695	icdA	SSON_1154	-	isocitrate dehydrogenase
1080	 33.64	-2	1236499..1236822	-	107	74311696	ycgW	SSON_1155	-	hypothetical protein
1081	 36.54	-2	1237518..1237922	-	134	74311697	ycgX	SSON_1156	-	hypothetical protein
1082	 48.09	0	1238143..1238874	-	243	74311698	ycgE	SSON_1157	-	putative transcriptional regulator
1083	 54.37	0	1240529..1241032	+	167	74311699	-	SSON_1159	-	IS1 ORF
1084	 55.08	0	1241774..1242679	+	301	161986545	-	SSON_1160	-	insertion element IS2 transposase InsD
1085	 45.24	-1	1242843..1243178	-	111