IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1059	 54.95	0	1211828..1215274	-	1148	74311675	mfd	SSON_1134	-	transcription-repair coupling factor
1060	 49.16	0	1215402..1216475	-	357	74311676	ycfT	SSON_1135	-	hypothetical protein
1061	 54.50	0	1216737..1217936	+	399	74311677	ycfU	SSON_1136	-	outer membrane-specific lipoprotein transporter subunit LolC
1062	 55.13	0	1217929..1218630	+	233	161986548	lolD	SSON_1137	-	lipoprotein transporter ATP-binding subunit
1063	 50.84	0	1218630..1219874	+	414	74311679	ycfW	SSON_1138	-	outer membrane-specific lipoprotein transporter subunit LolE
1064	 52.63	0	1219903..1220814	+	303	74311680	ycfX	SSON_1139	-	N-acetyl-D-glucosamine kinase
1065	 51.34	0	1220830..1221651	+	273	74311681	cobB	SSON_1140	-	NAD-dependent deacetylase
1066	 51.48	0	1221807..1222853	-	348	74311682	potD	SSON_1141	-	spermidine/putrescine ABC transporter periplasmic substrate-binding protein
1067	 49.94	0	1222850..1223644	-	264	74311683	potC	SSON_1142	-	spermidine/putrescine ABC transporter membrane protein
1068	 50.82	0	1223641..1224498	-	285	161986547	potB	SSON_1143	-	spermidine/putrescine ABC transporter membrane protein
1069	 50.57	0	1224482..1225618	-	378	74311685	potA	SSON_1144	-	putrescine/spermidine ABC transporter ATPase protein
1070	 49.39	0	1225868..1227094	+	408	74311686	pepT	SSON_1145	-	peptidase T
1071	 53.40	0	1227143..1228273	-	376	74311687	ycfD	SSON_1146	-	hypothetical protein
1072	 51.33	0	1228340..1229800	-	486	74311688	phoQ	SSON_1147	-	sensor protein PhoQ
1073	 46.88	-1	1229800..1230471	-	223