IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1048	 50.56	0	1203176..1203535	+	119	74311664	ycfF	SSON_1123	-	purine nucleoside phosphoramidase
1049	 50.00	0	1203538..1203915	+	125	74311665	ycfL	SSON_1124	-	hypothetical protein
1050	 56.39	+1	1203929..1204570	+	213	74311666	ycfM	SSON_1125	-	hypothetical protein
1051	 53.09	0	1204551..1205375	+	274	74311667	thiK	SSON_1126	-	thiamine kinase
1052	 52.73	0	1205386..1206411	+	341	74311668	ycfO	SSON_1127	-	beta-hexosaminidase
1053	 47.51	0	1206434..1206976	+	180	161986549	ycfP	SSON_1128	-	hypothetical protein
1054	 52.34	0	1207384..1208688	+	434	74311670	ndh	SSON_1129	-	respiratory NADH dehydrogenase
1055	 53.33	0	1208915..1209454	+	179	74311671	ycfJ	SSON_1130	-	hypothetical protein
1056	 50.07	0	1209516..1210226	-	236	74311672	ycfQ	SSON_1131	-	hypothetical protein
1057	 46.90	-1	1210388..1210645	+	85	74311673	ycfR	SSON_1132	-	hypothetical protein
1058	 52.63	0	1210728..1211546	-	272	74311674	ycfS	SSON_1133	-	hypothetical protein
1059	 54.95	0	1211828..1215274	-	1148	74311675	mfd	SSON_1134	-	transcription-repair coupling factor
1060	 49.16	0	1215402..1216475	-	357	74311676	ycfT	SSON_1135	-	hypothetical protein
1061	 54.50	0	1216737..1217936	+	399	74311677	ycfU	SSON_1136	-	outer membrane-specific lipoprotein transporter subunit LolC
1062	 55.13	0	1217929..1218630	+	233	161986548	lolD	SSON_1137	-	lipoprotein transporter ATP-binding subunit
1063	 50.84	0	1218630..1219874	+	414