version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1047 49.73 0 1200653..1202842 - 729 74311663 fhuE SSON_1122 - ferric-rhodotorulic acid outer membrane transporter 1048 50.56 0 1203176..1203535 + 119 74311664 ycfF SSON_1123 - purine nucleoside phosphoramidase 1049 50.00 0 1203538..1203915 + 125 74311665 ycfL SSON_1124 - hypothetical protein 1050 56.39 +1 1203929..1204570 + 213 74311666 ycfM SSON_1125 - hypothetical protein 1051 53.09 0 1204551..1205375 + 274 74311667 thiK SSON_1126 - thiamine kinase 1052 52.73 0 1205386..1206411 + 341 74311668 ycfO SSON_1127 - beta-hexosaminidase 1053 47.51 0 1206434..1206976 + 180 161986549 ycfP SSON_1128 - hypothetical protein 1054 52.34 0 1207384..1208688 + 434 74311670 ndh SSON_1129 - respiratory NADH dehydrogenase 1055 53.33 0 1208915..1209454 + 179 74311671 ycfJ SSON_1130 - hypothetical protein 1056 50.07 0 1209516..1210226 - 236 74311672 ycfQ SSON_1131 - hypothetical protein 1057 46.90 -1 1210388..1210645 + 85 74311673 ycfR SSON_1132 - hypothetical protein 1058 52.63 0 1210728..1211546 - 272 74311674 ycfS SSON_1133 - hypothetical protein 1059 54.95 0 1211828..1215274 - 1148 74311675 mfd SSON_1134 - transcription-repair coupling factor 1060 49.16 0 1215402..1216475 - 357 74311676 ycfT SSON_1135 - hypothetical protein 1061 54.50 0 1216737..1217936 + 399 74311677 ycfU SSON_1136 - outer membrane-specific lipoprotein transporter subunit LolC 1062 55.13 0 1217929..1218630 + 233 161986548 lolD SSON_1137 - lipoprotein transporter ATP-binding subunit 1063 50.84 0 1218630..1219874 + 414 74311679 ycfW SSON_1138 - outer membrane-specific lipoprotein transporter subunit LolE 1064 52.63 0 1219903..1220814 + 303 74311680 ycfX SSON_1139 - N-acetyl-D-glucosamine kinase 1065 51.34 0 1220830..1221651 + 273 74311681 cobB SSON_1140 - NAD-dependent deacetylase 1066 51.48 0 1221807..1222853 - 348 74311682 potD SSON_1141 - spermidine/putrescine ABC transporter periplasmic substrate-binding protein 1067 49.94 0 1222850..1223644 - 264 74311683 potC SSON_1142 - spermidine/putrescine ABC transporter membrane protein 1068 50.82 0 1223641..1224498 - 285 161986547 potB SSON_1143 - spermidine/putrescine ABC transporter membrane protein 1069 50.57 0 1224482..1225618 - 378 74311685 potA SSON_1144 - putrescine/spermidine ABC transporter ATPase protein 1070 49.39 0 1225868..1227094 + 408 74311686 pepT SSON_1145 - peptidase T 1071 53.40 0 1227143..1228273 - 376 74311687 ycfD SSON_1146 - hypothetical protein 1072 51.33 0 1228340..1229800 - 486 74311688 phoQ SSON_1147 - sensor protein PhoQ 1073 46.88 -1 1229800..1230471 - 223 74311689 phoP SSON_1148 - DNA-binding transcriptional regulator PhoP 1074 52.74 0 1230639..1232009 - 456 74311690 purB SSON_1149 - adenylosuccinate lyase 1075 57.17 +1 1232013..1232654 - 213 74311691 ycfC SSON_1150 - hypothetical protein 1076 53.48 0 1232690..1233796 - 368 161986546 trmU SSON_1151 - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1077 49.35 0 1233850..1234311 - 153 74311693 - SSON_1152 - putative phosphohydrolase 1078 51.76 0 1234321..1234944 - 207 74311694 ymfC SSON_1153 - 23S rRNA pseudouridine synthase E 1079 50.12 0 1235146..1236396 + 416 74311695 icdA SSON_1154 - isocitrate dehydrogenase 1080 33.64 -2 1236499..1236822 - 107 74311696 ycgW SSON_1155 - hypothetical protein 1081 36.54 -2 1237518..1237922 - 134 74311697 ycgX SSON_1156 - hypothetical protein 1082 48.09 0 1238143..1238874 - 243 74311698 ycgE SSON_1157 - putative transcriptional regulator 1083 54.37 0 1240529..1241032 + 167 74311699 - SSON_1159 - IS1 ORF 1084 55.08 0 1241774..1242679 + 301 161986545 - SSON_1160 - insertion element IS2 transposase InsD 1085 45.24 -1 1242843..1243178 - 111 74311701 - SSON_1161 - hypothetical protein 1086 52.98 0 1243182..1243466 - 94 74311702 - SSON_1162 - hypothetical protein 1087 43.45 -1 1244546..1244812 - 88 74311703 minE SSON_1163 - cell division topological specificity factor MinE 1088 49.94 0 1244816..1245628 - 270 74311704 minD SSON_1164 - cell division inhibitor MinD 1089 51.01 0 1245652..1246347 - 231 74311705 minC SSON_1165 - septum formation inhibitor 1090 42.28 -2 1246867..1247235 + 122 74311706 ycgJ SSON_1166 - hypothetical protein 1091 42.54 -2 1247343..1247744 - 133 74311707 ycgK SSON_1167 - hypothetical protein 1092 41.90 -2 1247953..1248279 + 108 74311708 ycgL SSON_1168 - hypothetical protein 1093 51.82 0 1248351..1249010 + 219 74311709 ycgM SSON_1169 - hypothetical protein 1094 46.76 -1 1249102..1249548 + 148 161986544 ycgN SSON_1170 - hypothetical protein 1095 54.37 0 1250337..1250840 - 167 74311711 - SSON_1171 - IS1 ORF 1096 54.17 0 1251387..1251890 - 167 74311712 - SSON_1172 - IS1 ORF 1097 48.33 0 1252592..1253011 + 139 74311713 umuD SSON_1174 - DNA polymerase V subunit UmuD 1098 57.81 +1 1253521..1254717 - 398 74311714 - SSON_1176 - ISSfl2 ORF 1099 52.54 0 1255775..1256305 - 176 74311715 dsbB SSON_1177 - disulfide bond formation protein B 1100 52.79 0 1256451..1257992 - 513 74311716 nhaB SSON_1178 - sodium/proton antiporter 1101 51.53 0 1258213..1258932 + 239 74311717 fadR SSON_1179 - fatty acid metabolism regulator 1102 49.51 0 1258984..1260516 - 510 74311718 ycgB SSON_1180 - hypothetical protein 1103 56.04 +1 1260846..1262144 + 432 74311719 dadA SSON_1181 - D-amino acid dehydrogenase small subunit 1104 57.98 +1 1262154..1263224 + 356 74311720 dadX SSON_1182 - alanine racemase 1105 52.45 0 1263611..1265347 - 578 161986543 ycgO SSON_1183 - potassium/proton antiporter 1106 53.55 0 1265442..1266356 - 304 74311723 ldcA SSON_1185 - L,D-carboxypeptidase A 1107 50.96 0 1266342..1267067 + 241 74311722 mltE SSON_1184 - murein transglycosylase E 1108 50.61 0 1267069..1267803 - 244 74311724 ycgR SSON_1186 - hypothetical protein 1109 54.51 0 1267971..1268225 + 84 74311725 ymgE SSON_1187 - transglycosylase associated protein 1110 46.53 -1 1268277..1268579 + 100 74311726 - SSON_1188 - IS600 ORF1 1111 52.10 0 1268720..1269433 + 237 74311727 - SSON_1189 - IS600 ORF2 1112 52.10 0 1270168..1270881 - 237 74311728 - SSON_1191 - IS600 ORF2 1113 46.20 -1 1271022..1271324 - 100 74311729 - SSON_1192 - IS600 ORF1 1114 42.86 -2 1271890..1273464 + 524 74311730 fliC SSON_1193 - flagellar filament structural protein 1115 54.44 0 1273629..1274348 + 239 74311731 fliA SSON_1194 - flagellar biosynthesis sigma factor 1116 54.56 0 1274968..1275471 + 167 74311732 - SSON_1196 - IS1 ORF 1117 49.69 0 1275810..1276610 + 266 74311733 fliY SSON_1197 - cystine transporter subunit 1118 52.91 0 1276664..1277695 - 343 74311734 - SSON_1198 - IS630 orf 1119 53.80 0 1277870..1278856 + 328 74311735 yedO SSON_1199 - D-cysteine desulfhydrase 1120 53.06 0 1278871..1279539 + 222 74311736 yecS SSON_1200 - putative transport system permease protein (former yecC) 1121 54.32 0 1279536..1280288 + 250 74311737 yecC SSON_1201 - putative amino-acid ABC transporter ATP-binding protein YecC 1122 46.20 -1 1280518..1281240 + 240 74311738 sdiA SSON_1202 - DNA-binding transcriptional activator SdiA 1123 47.56 0 1281307..1281531 - 74 74311739 yecF SSON_1203 - hypothetical protein 1124 49.62 0 1281990..1282646 + 218 74311740 uvrY SSON_1204 - response regulator 1125 51.83 0 1282643..1284475 + 610 161986542 uvrC SSON_1205 - excinuclease ABC subunit C 1126 52.28 0 1284532..1285080 + 182 74311742 pgsA SSON_1206 - phosphatidylglycerophosphate synthetase 1127 53.00 0 1285730..1286395 + 221 74311743 yecA SSON_1210 - hypothetical protein 1128 51.07 0 1286457..1287668 - 403 74311744 tyrP SSON_1211 - tyrosine-specific transport system 1129 47.08 -1 1287859..1288098 + 79 74311745 yecH SSON_1212 - hypothetical protein 1130 42.97 -2 1288136..1288633 - 165 74311746 ftn SSON_1213 - ferritin 1131 50.62 0 1288804..1289127 - 107 74311747 - SSON_1214 - hypothetical protein 1132 47.82 0 1289921..1290424 - 167 74311749 yecI SSON_1216 - ferritin-like protein 1133 51.41 0 1291221..1292210 + 329 74311750 araF SSON_1217 - L-arabinose-binding periplasmic protein 1134 52.15 0 1292280..1293794 + 504 74311751 araG SSON_1218 - L-arabinose transporter ATP-binding protein 1135 50.40 0 1293806..1294795 + 329 74311752 araH SSON_1219 - L-arabinose transporter permease protein 1136 50.56 0 1294962..1295762 + 266 74311753 otsB SSON_1220 - trehalose-6-phosphate phosphatase 1137 49.26 0 1295737..1297161 + 474 74311754 otsA SSON_1221 - trehalose-6-phosphate synthase 1138 45.45 -1 1297168..1297596 - 142 74311755 yecG SSON_1222 - universal stress protein UspC 1139 52.10 0 1298395..1299108 - 237 74311756 - SSON_1223 - IS600 ORF2 1140 46.20 -1 1299249..1299551 - 100 74311757 - SSON_1224 - IS600 ORF1 1141 46.39 -1 1299634..1299993 + 119 74311758 flhD SSON_1225 - transcriptional activator FlhD 1142 48.88 0 1299996..1300574 + 192 74311759 flhC SSON_1226 - transcriptional activator FlhC 1143 51.46 0 1300700..1301587 + 295 74311760 motA SSON_1227 - flagellar motor protein MotA 1144 52.86 0 1301584..1302510 + 308 74311761 motB SSON_1228 - flagellar motor protein MotB 1145 53.13 0 1302515..1304479 + 654 74311762 cheA SSON_1229 - chemotaxis protein CheA 1146 51.59 0 1304500..1305003 + 167 74311763 cheW SSON_1230 - purine-binding chemotaxis protein 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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