IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1042	 50.93	0	1195403..1196425	+	340	74311658	yceG	SSON_1117	-	hypothetical protein
1043	 53.74	0	1196415..1197056	+	213	74311659	tdk	SSON_1118	-	thymidylate kinase
1044	 54.13	0	1197053..1198057	+	334	74311660	holB	SSON_1119	-	DNA polymerase III subunit delta'
1045	 50.63	0	1198068..1198865	+	265	74311661	ycfH	SSON_1120	-	putative metallodependent hydrolase
1046	 52.51	0	1199160..1200593	+	477	74311662	ptsG	SSON_1121	-	glucose-specific PTS system IIBC components
1047	 49.73	0	1200653..1202842	-	729	74311663	fhuE	SSON_1122	-	ferric-rhodotorulic acid outer membrane transporter
1048	 50.56	0	1203176..1203535	+	119	74311664	ycfF	SSON_1123	-	purine nucleoside phosphoramidase
1049	 50.00	0	1203538..1203915	+	125	74311665	ycfL	SSON_1124	-	hypothetical protein
1050	 56.39	+1	1203929..1204570	+	213	74311666	ycfM	SSON_1125	-	hypothetical protein
1051	 53.09	0	1204551..1205375	+	274	74311667	thiK	SSON_1126	-	thiamine kinase
1052	 52.73	0	1205386..1206411	+	341	74311668	ycfO	SSON_1127	-	beta-hexosaminidase
1053	 47.51	0	1206434..1206976	+	180	161986549	ycfP	SSON_1128	-	hypothetical protein
1054	 52.34	0	1207384..1208688	+	434	74311670	ndh	SSON_1129	-	respiratory NADH dehydrogenase
1055	 53.33	0	1208915..1209454	+	179	74311671	ycfJ	SSON_1130	-	hypothetical protein
1056	 50.07	0	1209516..1210226	-	236	74311672	ycfQ	SSON_1131	-	hypothetical protein
1057	 46.90	-1	1210388..1210645	+	85