IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1027	 51.76	0	1179670..1181313	+	547	74311643	flgK	SSON_1102	-	flagellar hook-associated protein FlgK
1028	 50.73	0	1181325..1182278	+	317	74311644	flgL	SSON_1103	-	flagellar hook-associated protein FlgL
1029	 55.65	0	1182473..1185658	-	1061	74311645	rne	SSON_1104	-	ribonuclease E
1030	 46.40	-1	1185739..1186113	+	124	74311646	-	SSON_1105	-	hypothetical protein
1031	 51.56	0	1186231..1187190	+	319	74311647	yceC	SSON_1106	-	23S rRNA pseudouridylate synthase C
1032	 50.09	0	1187302..1187886	-	194	161986551	yceF	SSON_1107	-	Maf-like protein
1033	 49.43	0	1188085..1188606	+	173	74311649	yceD	SSON_1108	-	hypothetical protein
1034	 54.02	0	1188658..1188831	+	57	74311650	rpmF	SSON_1109	-	50S ribosomal protein L32
1035	 51.91	0	1188912..1189982	+	356	161986550	plsX	SSON_1110	-	putative glycerol-3-phosphate acyltransferase PlsX
1036	 54.82	0	1190050..1191003	+	317	74311652	fabH	SSON_1111	-	3-oxoacyl-(acyl carrier protein) synthase III
1037	 55.05	0	1191019..1191948	+	309	74311653	fabD	SSON_1112	-	malonyl-CoA-[acyl-carrier-protein] transacylase
1038	 51.70	0	1191961..1192695	+	244	74311654	fabG	SSON_1113	-	3-ketoacyl-(acyl-carrier-protein) reductase
1039	 48.10	0	1192906..1193142	+	78	74311655	acpP	SSON_1114	-	acyl carrier protein
1040	 53.30	0	1193230..1194471	+	413	74311656	fabF	SSON_1115	-	3-oxoacyl-(acyl carrier protein) synthase II
1041	 50.49	0	1194591..1195400	+	269	74311657	pabC	SSON_1116	-	4-amino-4-deoxychorismate lyase
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