IslandPathversion 1.0

IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 51.65 STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1020	 53.33	0	1172743..1173147	+	134	74311636	flgC	SSON_1094	-	flagellar basal body rod protein FlgC
1021	 54.89	0	1173159..1173854	+	231	74311637	flgD	SSON_1095	-	flagellar basal body rod modification protein
1022	 51.58	0	1173879..1175084	+	401	74311638	flgE	SSON_1096	-	flagellar hook protein FlgE
1023	 58.99	+1	1175104..1175859	+	251	74311639	flgF	SSON_1097	-	flagellar basal body rod protein FlgF
1024	 53.51	0	1176856..1177554	+	232	74311640	flgH	SSON_1099	-	flagellar basal body L-ring protein
1025	 54.01	0	1177566..1178663	+	365	74311641	flgI	SSON_1100	-	flagellar basal body P-ring protein
1026	 54.46	0	1178663..1179604	+	313	74311642	flgJ	SSON_1101	-	peptidoglycan hydrolase
1027	 51.76	0	1179670..1181313	+	547	74311643	flgK	SSON_1102	-	flagellar hook-associated protein FlgK
1028	 50.73	0	1181325..1182278	+	317	74311644	flgL	SSON_1103	-	flagellar hook-associated protein FlgL
1029	 55.65	0	1182473..1185658	-	1061	74311645	rne	SSON_1104	-	ribonuclease E
1030	 46.40	-1	1185739..1186113	+	124	74311646	-	SSON_1105	-	hypothetical protein
1031	 51.56	0	1186231..1187190	+	319	74311647	yceC	SSON_1106	-	23S rRNA pseudouridylate synthase C
1032	 50.09	0	1187302..1187886	-	194	161986551	yceF	SSON_1107	-	Maf-like protein
1033	 49.43	0	1188085..1188606	+	173	74311649	yceD	SSON_1108	-	hypothetical protein
1034	 54.02	0	1188658..1188831	+	57	74311650	rpmF	SSON_1109	-	50S ribosomal protein L32
1035	 51.91	0	1188912..1189982	+	356