IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1007	 47.97	0	1162547..1162792	-	81	74311623	dinI	SSON_1081	-	DNA damage-inducible protein I
1008	 53.10	0	1162866..1163912	-	348	74311624	pyrC	SSON_1082	-	dihydroorotase
1009	 46.70	-1	1164018..1164578	-	186	74311625	yceB	SSON_1083	-	hypothetical protein
1010	 49.07	0	1164712..1165359	-	215	74311626	grxB	SSON_1084	-	glutaredoxin 2
1011	 55.17	0	1165423..1166631	-	402	161986552	yceL	SSON_1085	-	multidrug resistance protein MdtH
1012	 49.40	0	1166867..1167451	+	194	74311628	rimJ	SSON_1086	-	ribosomal-protein-S5-alanine N-acetyltransferase
1013	 52.16	0	1167462..1168109	+	215	74311629	yceH	SSON_1087	-	hypothetical protein
1014	 54.33	0	1168111..1169034	+	307	74311630	mviM	SSON_1088	-	putative virulence factor
1015	 53.58	0	1169144..1170679	+	511	74311631	mviN	SSON_1089	-	putative virulence factor
1016	 47.96	0	1170719..1171135	-	138	74311632	flgN	SSON_1090	-	protein of flagellar biosynthesis
1017	 52.04	0	1171140..1171433	-	97	74311633	flgM	SSON_1091	-	anti-sigma28 factor FlgM
1018	 52.73	0	1171509..1172168	-	219	74311634	flgA	SSON_1092	-	flagellar basal body P-ring biosynthesis protein FlgA
1019	 53.48	0	1172323..1172739	+	138	74311635	flgB	SSON_1093	-	flagellar basal body rod protein FlgB
1020	 53.33	0	1172743..1173147	+	134	74311636	flgC	SSON_1094	-	flagellar basal body rod protein FlgC
1021	 54.89	0	1173159..1173854	+	231	74311637	flgD	SSON_1095	-	flagellar basal body rod modification protein
1022	 51.58	0	1173879..11750