IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
994	 57.73	+1	1149266..1150462	-	398	74311610	-	SSON_1068	-	ISSfl2 ORF
995	 50.93	0	1150820..1151575	-	251	74311611	-	SSON_1069	-	putative transposase subunit
996	 53.97	0	1151592..1153127	-	511	74311612	-	SSON_1070	-	putative transposase
997	 55.19	0	1154015..1154920	-	301	161986553	-	SSON_1071	-	insertion element IS2 transposase InsD
998	 53.01	0	1154878..1155243	-	121	74311614	-	SSON_1072	-	insertion sequence 2 OrfA protein
999	 49.66	0	1155526..1155966	+	146	74311615	-	SSON_1073	-	IS600 ORF2
1000	 52.77	0	1156514..1157434	-	306	74311616	htrB	SSON_1074	-	lipid A biosynthesis lauroyl acyltransferase
1001	 49.67	0	1157659..1158711	+	350	74311617	yceA	SSON_1075	-	hypothetical protein
1002	 47.40	-1	1158753..1159328	-	191	74311618	yceI	SSON_1076	-	hypothetical protein
1003	 51.32	0	1159332..1159898	-	188	74311619	-	SSON_1077	-	putative cytochrome
1004	 54.37	0	1160176..1160679	+	167	74311620	-	SSON_1078	-	IS1 ORF
1005	 52.46	0	1160770..1161888	-	372	74311621	solA	SSON_1079	-	N-methyltryptophan oxidase
1006	 44.71	-1	1162003..1162257	-	84	74311622	bssS	SSON_1080	-	biofilm formation regulatory protein BssS
1007	 47.97	0	1162547..1162792	-	81	74311623	dinI	SSON_1081	-	DNA damage-inducible protein I
1008	 53.10	0	1162866..1163912	-	348	74311624	pyrC	SSON_1082	-	dihydroorotase
1009	 46.70	-1	1164018..1164578	-	186