version 1.0
Shigella sonnei Ss046, complete genome - 1..4825265 4219 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 973 49.40 0 1128482..1129315 - 277 74311589 csgG SSON_1046 - curli production assembly/transport component, 2nd curli operon 974 41.97 -2 1129342..1129758 - 138 74311590 csgF SSON_1047 - curli assembly protein CsgF 975 43.08 -2 1129783..1130172 - 129 74311591 csgE SSON_1048 - curli assembly protein CsgE 976 54.37 0 1130941..1131444 + 167 74311592 - SSON_1049 - IS1 ORF 977 54.37 0 1132110..1132613 + 167 74311593 - SSON_1051 - IS1 ORF 978 41.67 -2 1133134..1133589 + 151 74311594 csgB SSON_1052 - curlin minor subunit 979 50.77 0 1133630..1134082 + 150 74311595 csgA SSON_1053 - cryptic curlin major subunit 980 53.03 0 1134198..1135370 + 390 74311596 - SSON_1054 - IS21 ORF1 981 52.63 0 1135370..1136167 + 265 74311597 - SSON_1055 - IS21 ORF2 982 43.24 -2 1136274..1136606 + 110 74311598 csgC SSON_1056 - putative autoagglutination protein 983 43.27 -1 1136727..1137038 + 103 74311599 - SSON_1057 - hypothetical protein 984 51.87 0 1137133..1137666 + 177 74311600 - SSON_1058 - hypothetical protein 985 50.54 0 1137608..1139089 + 493 74311601 ymdC SSON_1059 - putative synthase 986 43.78 -1 1139097..1140254 - 385 74311602 mdoC SSON_1060 - glucans biosynthesis protein 987 49.87 0 1140649..1142184 + 511 74311603 mdoG SSON_1061 - glucan biosynthesis protein G 988 55.03 0 1142177..1144720 + 847 74311604 mdoH SSON_1062 - glucosyltransferase MdoH 989 53.90 0 1144933..1146279 + 448 74311605 - SSON_1063 - IS4 orf 990 51.75 0 1146332..1146559 + 75 74311606 yceK SSON_1064 - hypothetical protein 991 50.26 0 1146560..1146937 - 125 74311607 msyB SSON_1065 - hypothetical protein 992 45.45 -1 1146964..1147062 - 32 74311608 - SSON_1066 - hypothetical protein 993 52.00 0 1147017..1148066 - 349 74311609 yceE SSON_1067 - putative transport protein 994 57.73 +1 1149266..1150462 - 398 74311610 - SSON_1068 - ISSfl2 ORF 995 50.93 0 1150820..1151575 - 251 74311611 - SSON_1069 - putative transposase subunit 996 53.97 0 1151592..1153127 - 511 74311612 - SSON_1070 - putative transposase 997 55.19 0 1154015..1154920 - 301 161986553 - SSON_1071 - insertion element IS2 transposase InsD 998 53.01 0 1154878..1155243 - 121 74311614 - SSON_1072 - insertion sequence 2 OrfA protein 999 49.66 0 1155526..1155966 + 146 74311615 - SSON_1073 - IS600 ORF2 1000 52.77 0 1156514..1157434 - 306 74311616 htrB SSON_1074 - lipid A biosynthesis lauroyl acyltransferase 1001 49.67 0 1157659..1158711 + 350 74311617 yceA SSON_1075 - hypothetical protein 1002 47.40 -1 1158753..1159328 - 191 74311618 yceI SSON_1076 - hypothetical protein 1003 51.32 0 1159332..1159898 - 188 74311619 - SSON_1077 - putative cytochrome 1004 54.37 0 1160176..1160679 + 167 74311620 - SSON_1078 - IS1 ORF 1005 52.46 0 1160770..1161888 - 372 74311621 solA SSON_1079 - N-methyltryptophan oxidase 1006 44.71 -1 1162003..1162257 - 84 74311622 bssS SSON_1080 - biofilm formation regulatory protein BssS 1007 47.97 0 1162547..1162792 - 81 74311623 dinI SSON_1081 - DNA damage-inducible protein I 1008 53.10 0 1162866..1163912 - 348 74311624 pyrC SSON_1082 - dihydroorotase 1009 46.70 -1 1164018..1164578 - 186 74311625 yceB SSON_1083 - hypothetical protein 1010 49.07 0 1164712..1165359 - 215 74311626 grxB SSON_1084 - glutaredoxin 2 1011 55.17 0 1165423..1166631 - 402 161986552 yceL SSON_1085 - multidrug resistance protein MdtH 1012 49.40 0 1166867..1167451 + 194 74311628 rimJ SSON_1086 - ribosomal-protein-S5-alanine N-acetyltransferase 1013 52.16 0 1167462..1168109 + 215 74311629 yceH SSON_1087 - hypothetical protein 1014 54.33 0 1168111..1169034 + 307 74311630 mviM SSON_1088 - putative virulence factor 1015 53.58 0 1169144..1170679 + 511 74311631 mviN SSON_1089 - putative virulence factor 1016 47.96 0 1170719..1171135 - 138 74311632 flgN SSON_1090 - protein of flagellar biosynthesis 1017 52.04 0 1171140..1171433 - 97 74311633 flgM SSON_1091 - anti-sigma28 factor FlgM 1018 52.73 0 1171509..1172168 - 219 74311634 flgA SSON_1092 - flagellar basal body P-ring biosynthesis protein FlgA 1019 53.48 0 1172323..1172739 + 138 74311635 flgB SSON_1093 - flagellar basal body rod protein FlgB 1020 53.33 0 1172743..1173147 + 134 74311636 flgC SSON_1094 - flagellar basal body rod protein FlgC 1021 54.89 0 1173159..1173854 + 231 74311637 flgD SSON_1095 - flagellar basal body rod modification protein 1022 51.58 0 1173879..1175084 + 401 74311638 flgE SSON_1096 - flagellar hook protein FlgE 1023 58.99 +1 1175104..1175859 + 251 74311639 flgF SSON_1097 - flagellar basal body rod protein FlgF 1024 53.51 0 1176856..1177554 + 232 74311640 flgH SSON_1099 - flagellar basal body L-ring protein 1025 54.01 0 1177566..1178663 + 365 74311641 flgI SSON_1100 - flagellar basal body P-ring protein 1026 54.46 0 1178663..1179604 + 313 74311642 flgJ SSON_1101 - peptidoglycan hydrolase 1027 51.76 0 1179670..1181313 + 547 74311643 flgK SSON_1102 - flagellar hook-associated protein FlgK 1028 50.73 0 1181325..1182278 + 317 74311644 flgL SSON_1103 - flagellar hook-associated protein FlgL 1029 55.65 0 1182473..1185658 - 1061 74311645 rne SSON_1104 - ribonuclease E 1030 46.40 -1 1185739..1186113 + 124 74311646 - SSON_1105 - hypothetical protein 1031 51.56 0 1186231..1187190 + 319 74311647 yceC SSON_1106 - 23S rRNA pseudouridylate synthase C 1032 50.09 0 1187302..1187886 - 194 161986551 yceF SSON_1107 - Maf-like protein 1033 49.43 0 1188085..1188606 + 173 74311649 yceD SSON_1108 - hypothetical protein 1034 54.02 0 1188658..1188831 + 57 74311650 rpmF SSON_1109 - 50S ribosomal protein L32 1035 51.91 0 1188912..1189982 + 356 161986550 plsX SSON_1110 - putative glycerol-3-phosphate acyltransferase PlsX 1036 54.82 0 1190050..1191003 + 317 74311652 fabH SSON_1111 - 3-oxoacyl-(acyl carrier protein) synthase III 1037 55.05 0 1191019..1191948 + 309 74311653 fabD SSON_1112 - malonyl-CoA-[acyl-carrier-protein] transacylase 1038 51.70 0 1191961..1192695 + 244 74311654 fabG SSON_1113 - 3-ketoacyl-(acyl-carrier-protein) reductase 1039 48.10 0 1192906..1193142 + 78 74311655 acpP SSON_1114 - acyl carrier protein 1040 53.30 0 1193230..1194471 + 413 74311656 fabF SSON_1115 - 3-oxoacyl-(acyl carrier protein) synthase II 1041 50.49 0 1194591..1195400 + 269 74311657 pabC SSON_1116 - 4-amino-4-deoxychorismate lyase 1042 50.93 0 1195403..1196425 + 340 74311658 yceG SSON_1117 - hypothetical protein 1043 53.74 0 1196415..1197056 + 213 74311659 tdk SSON_1118 - thymidylate kinase 1044 54.13 0 1197053..1198057 + 334 74311660 holB SSON_1119 - DNA polymerase III subunit delta' 1045 50.63 0 1198068..1198865 + 265 74311661 ycfH SSON_1120 - putative metallodependent hydrolase 1046 52.51 0 1199160..1200593 + 477 74311662 ptsG SSON_1121 - glucose-specific PTS system IIBC components 1047 49.73 0 1200653..1202842 - 729 74311663 fhuE SSON_1122 - ferric-rhodotorulic acid outer membrane transporter 1048 50.56 0 1203176..1203535 + 119 74311664 ycfF SSON_1123 - purine nucleoside phosphoramidase 1049 50.00 0 1203538..1203915 + 125 74311665 ycfL SSON_1124 - hypothetical protein 1050 56.39 +1 1203929..1204570 + 213 74311666 ycfM SSON_1125 - hypothetical protein 1051 53.09 0 1204551..1205375 + 274 74311667 thiK SSON_1126 - thiamine kinase 1052 52.73 0 1205386..1206411 + 341 74311668 ycfO SSON_1127 - beta-hexosaminidase 1053 47.51 0 1206434..1206976 + 180 161986549 ycfP SSON_1128 - hypothetical protein 1054 52.34 0 1207384..1208688 + 434 74311670 ndh SSON_1129 - respiratory NADH dehydrogenase 1055 53.33 0 1208915..1209454 + 179 74311671 ycfJ SSON_1130 - hypothetical protein 1056 50.07 0 1209516..1210226 - 236 74311672 ycfQ SSON_1131 - hypothetical protein 1057 46.90 -1 1210388..1210645 + 85 74311673 ycfR SSON_1132 - hypothetical protein 1058 52.63 0 1210728..1211546 - 272 74311674 ycfS SSON_1133 - hypothetical protein 1059 54.95 0 1211828..1215274 - 1148 74311675 mfd SSON_1134 - transcription-repair coupling factor 1060 49.16 0 1215402..1216475 - 357 74311676 ycfT SSON_1135 - hypothetical protein 1061 54.50 0 1216737..1217936 + 399 74311677 ycfU SSON_1136 - outer membrane-specific lipoprotein transporter subunit LolC 1062 55.13 0 1217929..1218630 + 233 161986548 lolD SSON_1137 - lipoprotein transporter ATP-binding subunit 1063 50.84 0 1218630..1219874 + 414 74311679 ycfW SSON_1138 - outer membrane-specific lipoprotein transporter subunit LolE 1064 52.63 0 1219903..1220814 + 303 74311680 ycfX SSON_1139 - N-acetyl-D-glucosamine kinase 1065 51.34 0 1220830..1221651 + 273 74311681 cobB SSON_1140 - NAD-dependent deacetylase 1066 51.48 0 1221807..1222853 - 348 74311682 potD SSON_1141 - spermidine/putrescine ABC transporter periplasmic substrate-binding protein 1067 49.94 0 1222850..1223644 - 264 74311683 potC SSON_1142 - spermidine/putrescine ABC transporter membrane protein 1068 50.82 0 1223641..1224498 - 285 161986547 potB SSON_1143 - spermidine/putrescine ABC transporter membrane protein 1069 50.57 0 1224482..1225618 - 378 74311685 potA SSON_1144 - putrescine/spermidine ABC transporter ATPase protein 1070 49.39 0 1225868..1227094 + 408 74311686 pepT SSON_1145 - peptidase T 1071 53.40 0 1227143..1228273 - 376 74311687 ycfD SSON_1146 - hypothetical protein 1072 51.33 0 1228340..1229800 - 486 74311688 phoQ SSON_1147 - sensor protein PhoQ 51.65 MEAN 4.20 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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