IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
972	 54.07	0	1127878..1128417	+	179	74311588	ycdZ	SSON_1045	-	hypothetical protein
973	 49.40	0	1128482..1129315	-	277	74311589	csgG	SSON_1046	-	curli production assembly/transport component, 2nd curli operon
974	 41.97	-2	1129342..1129758	-	138	74311590	csgF	SSON_1047	-	curli assembly protein CsgF
975	 43.08	-2	1129783..1130172	-	129	74311591	csgE	SSON_1048	-	curli assembly protein CsgE
976	 54.37	0	1130941..1131444	+	167	74311592	-	SSON_1049	-	IS1 ORF
977	 54.37	0	1132110..1132613	+	167	74311593	-	SSON_1051	-	IS1 ORF
978	 41.67	-2	1133134..1133589	+	151	74311594	csgB	SSON_1052	-	curlin minor subunit
979	 50.77	0	1133630..1134082	+	150	74311595	csgA	SSON_1053	-	cryptic curlin major subunit
980	 53.03	0	1134198..1135370	+	390	74311596	-	SSON_1054	-	IS21 ORF1
981	 52.63	0	1135370..1136167	+	265	74311597	-	SSON_1055	-	IS21 ORF2
982	 43.24	-2	1136274..1136606	+	110	74311598	csgC	SSON_1056	-	putative autoagglutination protein
983	 43.27	-1	1136727..1137038	+	103	74311599	-	SSON_1057	-	hypothetical protein
984	 51.87	0	1137133..1137666	+	177	74311600	-	SSON_1058	-	hypothetical protein
985	 50.54	0	1137608..1139089	+	493	74311601	ymdC	SSON_1059	-	putative synthase
986	 43.78	-1	1139097..1140254	-	385	74311602	mdoC	SSON_1060	-	glucans biosynthesis protein
987	 49.87	0	1140649..1142184	+	511