IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
965	 51.24	0	1119843..1120970	+	375	74311581	ycdO	SSON_1037	-	hypothetical protein
966	 53.62	0	1120976..1122247	+	423	74311582	ycdB	SSON_1038	-	hypothetical protein
967	 52.21	0	1122592..1123656	+	354	74311583	phoH	SSON_1039	-	hypothetical protein
968	 43.52	-1	1124237..1124923	+	228	74311584	-	SSON_1040	-	hypothetical protein
969	 51.02	0	1125477..1126454	+	325	74311585	ycdW	SSON_1042	-	putative dehydrogenase
970	 48.24	0	1126509..1127246	+	245	74311586	ycdX	SSON_1043	-	putative hydrolase
971	 53.69	0	1127270..1127824	+	184	74311587	ycdY	SSON_1044	-	putative oxidoreductase component
972	 54.07	0	1127878..1128417	+	179	74311588	ycdZ	SSON_1045	-	hypothetical protein
973	 49.40	0	1128482..1129315	-	277	74311589	csgG	SSON_1046	-	curli production assembly/transport component, 2nd curli operon
974	 41.97	-2	1129342..1129758	-	138	74311590	csgF	SSON_1047	-	curli assembly protein CsgF
975	 43.08	-2	1129783..1130172	-	129	74311591	csgE	SSON_1048	-	curli assembly protein CsgE
976	 54.37	0	1130941..1131444	+	167	74311592	-	SSON_1049	-	IS1 ORF
977	 54.37	0	1132110..1132613	+	167	74311593	-	SSON_1051	-	IS1 ORF
978	 41.67	-2	1133134..1133589	+	151	74311594	csgB	SSON_1052	-	curlin minor subunit
979	 50.77	0	1133630..1134082	+	150	74311595	csgA	SSON_1053	-	cryptic curlin major subunit
980	 53.03	0	1134198..1135370	+	390