IslandPath Analysis: Shigella sonnei Ss046



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 51.65   STD DEV: 4.20
Shigella sonnei Ss046, complete genome - 1..4825265
4219 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
957	 56.01	+1	1106289..1106879	-	196	74311573	-	SSON_1026	-	hypothetical protein
958	 58.18	+1	1106889..1107689	-	266	74311574	-	SSON_1027	-	putative acetyltransferase
959	 55.92	+1	1108871..1109605	-	244	74311575	-	SSON_1030	-	putative synthetase
960	 54.37	0	1110191..1110694	-	167	74311576	-	SSON_1031	-	IS1 ORF
961	 51.02	0	1111719..1112357	+	212	74311577	ycdC	SSON_1033	-	putative tet operon regulator
962	 56.70	+1	1112397..1116359	-	1320	74311578	putA	SSON_1034	-	trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase
963	 53.61	0	1116781..1118289	+	502	74311579	putP	SSON_1035	-	major sodium/proline symporter
964	 54.52	0	1118946..1119785	+	279	74311580	ycdN	SSON_1036	-	high-affinity iron permease
965	 51.24	0	1119843..1120970	+	375	74311581	ycdO	SSON_1037	-	hypothetical protein
966	 53.62	0	1120976..1122247	+	423	74311582	ycdB	SSON_1038	-	hypothetical protein
967	 52.21	0	1122592..1123656	+	354	74311583	phoH	SSON_1039	-	hypothetical protein
968	 43.52	-1	1124237..1124923	+	228	74311584	-	SSON_1040	-	hypothetical protein
969	 51.02	0	1125477..1126454	+	325	74311585	ycdW	SSON_1042	-	putative dehydrogenase
970	 48.24	0	1126509..1127246	+	245	74311586	ycdX	SSON_1043	-	putative hydrolase
971	 53.69	0	1127270..1127824	+	184	74311587	ycdY	SSON_1044	-	putative oxidoreductase component
972	 54.07	0	1127878..1128417	+	179