IslandPathversion 1.0

IslandPath Analysis: Shewanella sediminis HAW-EB3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.69 STD DEV: 3.68
Shewanella sediminis HAW-EB3, complete genome - 1..5517674
4497 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
937	 44.33	0	1121661..1123433	+	590	157374078	-	Ssed_0939	-	ABC transporter-related protein
938	 44.32	0	1123593..1123856	+	87	157374079	-	Ssed_0940	-	hypothetical protein
939	 42.12	-1	1124394..1124939	-	181	157374080	-	Ssed_0941	-	hypothetical protein
940	 43.76	0	1125081..1125665	+	194	157374081	-	Ssed_0942	-	hypothetical protein
941	 45.20	0	1125783..1126532	+	249	157374082	-	Ssed_0943	-	oxidoreductase FAD/NAD(P)-binding subunit
942	 45.79	0	1126601..1127194	+	197	157374083	-	Ssed_0944	-	glutathione S-transferase domain-containing protein
943	 44.05	0	1127421..1128428	+	335	157374084	-	Ssed_0945	-	extracellular solute-binding protein
944	 47.67	0	1128657..1130288	+	543	157374085	-	Ssed_0946	-	binding-protein-dependent transport systems inner membrane component
945	 48.40	0	1130382..1131410	+	342	157374086	-	Ssed_0947	-	ABC transporter related
946	 48.40	0	1131459..1133150	+	563	157374087	-	Ssed_0948	-	gamma-glutamyltransferase
947	 45.47	0	1133279..1134217	+	312	157374088	-	Ssed_0949	-	Dyp-type peroxidase family protein
948	 45.70	0	1134306..1134782	-	158	157374089	-	Ssed_0950	-	cupin 2 domain-containing protein
949	 44.59	0	1135008..1135478	-	156	157374090	-	Ssed_0951	-	arginine repressor
950	 47.65	0	1135847..1136782	+	311	157374091	-	Ssed_0952	-	malate dehydrogenase
951	 45.99	0	1136876..1137847	-	323	157374092	-	Ssed_0953	-	trans-hexaprenyltranstransferase
952	 45.19	0	1138126..1138437	+	103	157374093	-	Ssed_0954	-	50S ribosomal protein L21
953	 44.71	0	1138453..1138707	+	84	157374094	-	Ssed_0955	-	50S ribosomal protein L27
954	 46.08	0	1138849..1140009	+	386	157374095	-	Ssed_0956	-	GTPase ObgE
955	 47.77	0	1140080..1140841	+	253	157374096	-	Ssed_0957	-	hypothetical protein
956	 49.57	0	1140841..1141308	+	155	157374097	-	Ssed_0958	-	hypothetical protein
957	 43.06	0	1141371..1141853	+	160	157374098	-	Ssed_0959	-	dihydrofolate reductase
958	 45.99	0	1141954..1142340	+	128	157374099	-	Ssed_0960	-	hypothetical protein
959	 45.61	0	1142417..1144444	-	675	157374100	-	Ssed_0961	-	methyl-accepting chemotaxis sensory transducer
960	 47.15	0	1144581..1145405	-	274	157374101	-	Ssed_0962	-	diadenosine tetraphosphatase
961	 47.24	0	1145440..1145820	-	126	157374102	-	Ssed_0963	-	ApaG
962	 47.51	0	1145915..1146718	-	267	157374103	-	Ssed_0964	-	dimethyladenosine transferase
963	 47.01	0	1146732..1147718	-	328	157374104	-	Ssed_0965	-	4-hydroxythreonine-4-phosphate dehydrogenase
964	 46.51	0	1147724..1149028	-	434	157374105	-	Ssed_0966	-	PpiC-type peptidyl-prolyl cis-trans isomerase
965	 44.77	0	1149150..1151474	-	774	157374106	-	Ssed_0967	-	organic solvent tolerance protein
966	 44.48	0	1151629..1152633	+	334	157374107	-	Ssed_0968	-	aminoglycoside phosphotransferase
967	 50.00	0	1152630..1153319	+	229	157374108	-	Ssed_0969	-	nucleotidyl transferase
968	 47.18	0	1153396..1154175	+	259	157374109	-	Ssed_0970	-	Dna-J like membrane chaperone protein
969	 46.19	0	1154315..1154944	+	209	157374110	-	Ssed_0971	-	hypothetical protein
970	 51.13	+1	1154987..1155958	+	323	157374111	-	Ssed_0972	-	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
971	 52.64	+1	1156025..1157200	-	391	157374112	-	Ssed_0973	-	phosphoribosylglycinamide formyltransferase 2
972	 49.51	0	1157515..1157922	+	135	157374113	-	Ssed_0974	-	hypothetical protein
973	 48.81	0	1157924..1159060	+	378	157374114	-	Ssed_0975	-	secretion protein HlyD family protein
974	 45.93	0	1159166..1159975	-	269	157374115	-	Ssed_0976	-	Sel1 domain-containing protein
975	 49.05	0	1160332..1161801	+	489	157374116	-	Ssed_0977	-	ATPase central domain-containing protein
976	 47.04	0	1161907..1162497	-	196	157374117	-	Ssed_0978	-	hypothetical protein
977	 42.90	-1	1162552..1162917	+	121	157374118	-	Ssed_0979	-	Fe-S protein-like protein
978	 47.18	0	1163003..1164295	-	430	157374119	-	Ssed_0980	-	integral membrane sensor signal transduction histidine kinase
979	 45.52	0	1164352..1165065	-	237	157374120	-	Ssed_0981	-	two component transcriptional regulator
980	 43.81	0	1165065..1165484	-	139	157374121	-	Ssed_0982	-	hypothetical protein
981	 45.08	0	1165490..1166374	-	294	157374122	-	Ssed_0983	-	MltA-interacting MipA family protein
982	 49.66	0	1166673..1167848	+	391	157374123	-	Ssed_0984	-	acyl-CoA dehydrogenase domain-containing protein
983	 40.28	-1	1168034..1169242	-	402	157374124	-	Ssed_0985	-	response regulator receiver protein
984	 39.84	-1	1169211..1169579	-	122	157374125	-	Ssed_0986	-	Hpt protein
985	 42.31	-1	1169572..1172388	-	938	157374126	-	Ssed_0987	-	histidine kinase
986	 43.66	0	1172495..1173385	-	296	157374127	-	Ssed_0988	-	UspA domain-containing protein
987	 42.04	-1	1173633..1174103	-	156	157374128	-	Ssed_0989	-	hypothetical protein
988	 44.00	0	1174350..1174724	-	124	157374129	-	Ssed_0990	-	hypothetical protein
989	 41.25	-1	1175131..1175370	+	79	157374130	-	Ssed_0991	-	hypothetical protein
990	 45.24	0	1175561..1175980	-	139	157374131	-	Ssed_0992	-	glyoxalase/bleomycin resistance protein/dioxygenase
991	 45.74	0	1176021..1176407	-	128	157374132	-	Ssed_0993	-	glyoxalase/dioxygenase superfamily protein
992	 48.86	0	1176429..1177085	-	218	157374133	-	Ssed_0994	-	NADPH-dependent FMN reductase
993	 49.28	0	1177229..1177849	+	206	157374134	-	Ssed_0995	-	hypothetical protein
994	 46.77	0	1177821..1178564	+	247	157374135	-	Ssed_0996	-	pseudouridine synthase
995	 44.20	0	1178674..1179639	+	321	157374136	-	Ssed_0997	-	LysR family transcriptional regulator
996	 48.98	0	1179811..1182111	+	766	157374137	-	Ssed_0998	-	decaheme cytochrome c
997	 47.39	0	1182926..1183537	+	203	157374138	-	Ssed_0999	-	hypothetical protein
998	 49.38	0	1183639..1185171	-	510	157374139	-	Ssed_1000	-	major facilitator transporter
999	 50.62	+1	1185661..1186221	+	186	157374140	-	Ssed_1001	-	hypothetical protein
1000	 46.96	0	1186394..1189696	+	1100	157374141	-	Ssed_1002	-	methyl-accepting chemotaxis protein-like protein
1001	 51.22	+1	1189876..1190451	-	191	157374142	-	Ssed_1003	-	hypothetical protein
1002	 52.77	+1	1190429..1191241	-	270	157374143	-	Ssed_1004	-	hypothetical protein
1003	 50.04	0	1191313..1192425	+	370	157374144	-	Ssed_1005	-	radical SAM domain-containing protein
1004	 49.07	0	1192645..1194366	+	573	157374145	-	Ssed_1006	-	methyl-accepting chemotaxis sensory transducer
1005	 47.68	0	1194734..1196455	+	573	157374146	-	Ssed_1007	-	methyl-accepting chemotaxis sensory transducer
1006	 50.65	+1	1196866..1199781	-	971	157374147	-	Ssed_1008	-	valyl-tRNA synthetase
1007	 47.13	0	1199797..1200267	-	156	157374148	-	Ssed_1009	-	DNA polymerase III chi subunit, HolC
1008	 40.33	-1	1200612..1201754	-	380	157374149	-	Ssed_1010	-	ABC-type sugar transport system, periplasmic component
1009	 52.23	+1	1203137..1204327	+	396	157374150	-	Ssed_1011	-	ribosome-associated GTPase
1010	 45.08	0	1204825..1206705	+	626	157374151	-	Ssed_1012	-	hypothetical protein
1011	 50.99	+1	1206827..1207279	+	150	157374152	-	Ssed_1013	-	hypothetical protein
1012	 49.70	0	1207528..1209036	-	502	157374153	-	Ssed_1014	-	leucyl aminopeptidase
1013	 50.58	+1	1209257..1210369	+	370	157374154	-	Ssed_1015	-	permease YjgP/YjgQ family protein
1014	 49.10	0	1210366..1211424	+	352	157374155	-	Ssed_1016	-	permease YjgP/YjgQ family protein
1015	 50.48	+1	1211567..1212091	-	174	157374156	-	Ssed_1017	-	RDD domain-containing protein
1016	 39.53	-1	1212179..1212436	-	85	157374157	-	Ssed_1018	-	hypothetical protein
1017	 51.44	+1	1212556..1213041	-	161	157374158	-	Ssed_1019	-	GCN5-related N-acetyltransferase
1018	 51.11	+1	1213148..1214638	-	496	157374159	-	Ssed_1020	-	carboxypeptidase Taq
1019	 46.73	0	1214819..1215445	-	208	157374160	-	Ssed_1021	-	hypothetical protein
1020	 49.39	0	1215527..1216834	-	435	157374161	-	Ssed_1022	-	DEAD/DEAH box helicase domain-containing protein
1021	 47.58	0	1217214..1218413	+	399	157374162	-	Ssed_1023	-	response regulator receiver modulated diguanylate phosphodiesterase
1022	 51.96	+1	1218507..1220294	-	595	157374163	-	Ssed_1024	-	peptidase M24
1023	 50.79	+1	1220589..1221785	+	398	157374164	-	Ssed_1025	-	major facilitator transporter
1024	 48.85	0	1221879..1222658	+	259	157374165	-	Ssed_1026	-	ROK family protein
1025	 50.91	+1	1223070..1224383	+	437	157374166	-	Ssed_1027	-	phosphoesterase, PA-phosphatase related
1026	 51.31	+1	1224666..1225883	+	405	157374167	-	Ssed_1028	-	peptidase M24
1027	 47.56	0	1225968..1226438	-	156	157374168	-	Ssed_1029	-	peptidylprolyl isomerase, FKBP-type
1028	 47.62	0	1226635..1226970	-	111	157374169	-	Ssed_1030	-	cold shock DNA-binding domain-containing protein
1029	 48.77	0	1227131..1228426	-	431	157374170	-	Ssed_1031	-	Signal transduction histidine kinase-like protein
1030	 48.64	0	1228423..1229121	-	232	157374171	-	Ssed_1032	-	response regulator
1031	 48.53	0	1229186..1229560	-	124	157374172	-	Ssed_1033	-	hypothetical protein
1032	 52.50	+1	1229557..1232217	-	886	157374173	-	Ssed_1034	-	PPE repeat-containing protein
1033	 48.65	0	1232376..1232858	-	160	157374174	-	Ssed_1035	-	hypothetical protein
1034	 49.61	0	1233026..1233283	+	85	157374175	-	Ssed_1036	-	MarR family transcriptional regulator
1035	 50.94	+1	1233285..1233761	-	158	157374176	-	Ssed_1037	-	hypothetical protein
1036	 48.77	0	1233988..1234920	+	310	157374177	-	Ssed_1038	-	hypothetical protein
46.69	MEAN

3.68	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.