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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 937 44.33 0 1121661..1123433 + 590 157374078 - Ssed_0939 - ABC transporter-related protein 938 44.32 0 1123593..1123856 + 87 157374079 - Ssed_0940 - hypothetical protein 939 42.12 -1 1124394..1124939 - 181 157374080 - Ssed_0941 - hypothetical protein 940 43.76 0 1125081..1125665 + 194 157374081 - Ssed_0942 - hypothetical protein 941 45.20 0 1125783..1126532 + 249 157374082 - Ssed_0943 - oxidoreductase FAD/NAD(P)-binding subunit 942 45.79 0 1126601..1127194 + 197 157374083 - Ssed_0944 - glutathione S-transferase domain-containing protein 943 44.05 0 1127421..1128428 + 335 157374084 - Ssed_0945 - extracellular solute-binding protein 944 47.67 0 1128657..1130288 + 543 157374085 - Ssed_0946 - binding-protein-dependent transport systems inner membrane component 945 48.40 0 1130382..1131410 + 342 157374086 - Ssed_0947 - ABC transporter related 946 48.40 0 1131459..1133150 + 563 157374087 - Ssed_0948 - gamma-glutamyltransferase 947 45.47 0 1133279..1134217 + 312 157374088 - Ssed_0949 - Dyp-type peroxidase family protein 948 45.70 0 1134306..1134782 - 158 157374089 - Ssed_0950 - cupin 2 domain-containing protein 949 44.59 0 1135008..1135478 - 156 157374090 - Ssed_0951 - arginine repressor 950 47.65 0 1135847..1136782 + 311 157374091 - Ssed_0952 - malate dehydrogenase 951 45.99 0 1136876..1137847 - 323 157374092 - Ssed_0953 - trans-hexaprenyltranstransferase 952 45.19 0 1138126..1138437 + 103 157374093 - Ssed_0954 - 50S ribosomal protein L21 953 44.71 0 1138453..1138707 + 84 157374094 - Ssed_0955 - 50S ribosomal protein L27 954 46.08 0 1138849..1140009 + 386 157374095 - Ssed_0956 - GTPase ObgE 955 47.77 0 1140080..1140841 + 253 157374096 - Ssed_0957 - hypothetical protein 956 49.57 0 1140841..1141308 + 155 157374097 - Ssed_0958 - hypothetical protein 957 43.06 0 1141371..1141853 + 160 157374098 - Ssed_0959 - dihydrofolate reductase 958 45.99 0 1141954..1142340 + 128 157374099 - Ssed_0960 - hypothetical protein 959 45.61 0 1142417..1144444 - 675 157374100 - Ssed_0961 - methyl-accepting chemotaxis sensory transducer 960 47.15 0 1144581..1145405 - 274 157374101 - Ssed_0962 - diadenosine tetraphosphatase 961 47.24 0 1145440..1145820 - 126 157374102 - Ssed_0963 - ApaG 962 47.51 0 1145915..1146718 - 267 157374103 - Ssed_0964 - dimethyladenosine transferase 963 47.01 0 1146732..1147718 - 328 157374104 - Ssed_0965 - 4-hydroxythreonine-4-phosphate dehydrogenase 964 46.51 0 1147724..1149028 - 434 157374105 - Ssed_0966 - PpiC-type peptidyl-prolyl cis-trans isomerase 965 44.77 0 1149150..1151474 - 774 157374106 - Ssed_0967 - organic solvent tolerance protein 966 44.48 0 1151629..1152633 + 334 157374107 - Ssed_0968 - aminoglycoside phosphotransferase 967 50.00 0 1152630..1153319 + 229 157374108 - Ssed_0969 - nucleotidyl transferase 968 47.18 0 1153396..1154175 + 259 157374109 - Ssed_0970 - Dna-J like membrane chaperone protein 969 46.19 0 1154315..1154944 + 209 157374110 - Ssed_0971 - hypothetical protein 970 51.13 +1 1154987..1155958 + 323 157374111 - Ssed_0972 - D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding 971 52.64 +1 1156025..1157200 - 391 157374112 - Ssed_0973 - phosphoribosylglycinamide formyltransferase 2 972 49.51 0 1157515..1157922 + 135 157374113 - Ssed_0974 - hypothetical protein 973 48.81 0 1157924..1159060 + 378 157374114 - Ssed_0975 - secretion protein HlyD family protein 974 45.93 0 1159166..1159975 - 269 157374115 - Ssed_0976 - Sel1 domain-containing protein 975 49.05 0 1160332..1161801 + 489 157374116 - Ssed_0977 - ATPase central domain-containing protein 976 47.04 0 1161907..1162497 - 196 157374117 - Ssed_0978 - hypothetical protein 977 42.90 -1 1162552..1162917 + 121 157374118 - Ssed_0979 - Fe-S protein-like protein 978 47.18 0 1163003..1164295 - 430 157374119 - Ssed_0980 - integral membrane sensor signal transduction histidine kinase 979 45.52 0 1164352..1165065 - 237 157374120 - Ssed_0981 - two component transcriptional regulator 980 43.81 0 1165065..1165484 - 139 157374121 - Ssed_0982 - hypothetical protein 981 45.08 0 1165490..1166374 - 294 157374122 - Ssed_0983 - MltA-interacting MipA family protein 982 49.66 0 1166673..1167848 + 391 157374123 - Ssed_0984 - acyl-CoA dehydrogenase domain-containing protein 983 40.28 -1 1168034..1169242 - 402 157374124 - Ssed_0985 - response regulator receiver protein 984 39.84 -1 1169211..1169579 - 122 157374125 - Ssed_0986 - Hpt protein 985 42.31 -1 1169572..1172388 - 938 157374126 - Ssed_0987 - histidine kinase 986 43.66 0 1172495..1173385 - 296 157374127 - Ssed_0988 - UspA domain-containing protein 987 42.04 -1 1173633..1174103 - 156 157374128 - Ssed_0989 - hypothetical protein 988 44.00 0 1174350..1174724 - 124 157374129 - Ssed_0990 - hypothetical protein 989 41.25 -1 1175131..1175370 + 79 157374130 - Ssed_0991 - hypothetical protein 990 45.24 0 1175561..1175980 - 139 157374131 - Ssed_0992 - glyoxalase/bleomycin resistance protein/dioxygenase 991 45.74 0 1176021..1176407 - 128 157374132 - Ssed_0993 - glyoxalase/dioxygenase superfamily protein 992 48.86 0 1176429..1177085 - 218 157374133 - Ssed_0994 - NADPH-dependent FMN reductase 993 49.28 0 1177229..1177849 + 206 157374134 - Ssed_0995 - hypothetical protein 994 46.77 0 1177821..1178564 + 247 157374135 - Ssed_0996 - pseudouridine synthase 995 44.20 0 1178674..1179639 + 321 157374136 - Ssed_0997 - LysR family transcriptional regulator 996 48.98 0 1179811..1182111 + 766 157374137 - Ssed_0998 - decaheme cytochrome c 997 47.39 0 1182926..1183537 + 203 157374138 - Ssed_0999 - hypothetical protein 998 49.38 0 1183639..1185171 - 510 157374139 - Ssed_1000 - major facilitator transporter 999 50.62 +1 1185661..1186221 + 186 157374140 - Ssed_1001 - hypothetical protein 1000 46.96 0 1186394..1189696 + 1100 157374141 - Ssed_1002 - methyl-accepting chemotaxis protein-like protein 1001 51.22 +1 1189876..1190451 - 191 157374142 - Ssed_1003 - hypothetical protein 1002 52.77 +1 1190429..1191241 - 270 157374143 - Ssed_1004 - hypothetical protein 1003 50.04 0 1191313..1192425 + 370 157374144 - Ssed_1005 - radical SAM domain-containing protein 1004 49.07 0 1192645..1194366 + 573 157374145 - Ssed_1006 - methyl-accepting chemotaxis sensory transducer 1005 47.68 0 1194734..1196455 + 573 157374146 - Ssed_1007 - methyl-accepting chemotaxis sensory transducer 1006 50.65 +1 1196866..1199781 - 971 157374147 - Ssed_1008 - valyl-tRNA synthetase 1007 47.13 0 1199797..1200267 - 156 157374148 - Ssed_1009 - DNA polymerase III chi subunit, HolC 1008 40.33 -1 1200612..1201754 - 380 157374149 - Ssed_1010 - ABC-type sugar transport system, periplasmic component 1009 52.23 +1 1203137..1204327 + 396 157374150 - Ssed_1011 - ribosome-associated GTPase 1010 45.08 0 1204825..1206705 + 626 157374151 - Ssed_1012 - hypothetical protein 1011 50.99 +1 1206827..1207279 + 150 157374152 - Ssed_1013 - hypothetical protein 1012 49.70 0 1207528..1209036 - 502 157374153 - Ssed_1014 - leucyl aminopeptidase 1013 50.58 +1 1209257..1210369 + 370 157374154 - Ssed_1015 - permease YjgP/YjgQ family protein 1014 49.10 0 1210366..1211424 + 352 157374155 - Ssed_1016 - permease YjgP/YjgQ family protein 1015 50.48 +1 1211567..1212091 - 174 157374156 - Ssed_1017 - RDD domain-containing protein 1016 39.53 -1 1212179..1212436 - 85 157374157 - Ssed_1018 - hypothetical protein 1017 51.44 +1 1212556..1213041 - 161 157374158 - Ssed_1019 - GCN5-related N-acetyltransferase 1018 51.11 +1 1213148..1214638 - 496 157374159 - Ssed_1020 - carboxypeptidase Taq 1019 46.73 0 1214819..1215445 - 208 157374160 - Ssed_1021 - hypothetical protein 1020 49.39 0 1215527..1216834 - 435 157374161 - Ssed_1022 - DEAD/DEAH box helicase domain-containing protein 1021 47.58 0 1217214..1218413 + 399 157374162 - Ssed_1023 - response regulator receiver modulated diguanylate phosphodiesterase 1022 51.96 +1 1218507..1220294 - 595 157374163 - Ssed_1024 - peptidase M24 1023 50.79 +1 1220589..1221785 + 398 157374164 - Ssed_1025 - major facilitator transporter 1024 48.85 0 1221879..1222658 + 259 157374165 - Ssed_1026 - ROK family protein 1025 50.91 +1 1223070..1224383 + 437 157374166 - Ssed_1027 - phosphoesterase, PA-phosphatase related 1026 51.31 +1 1224666..1225883 + 405 157374167 - Ssed_1028 - peptidase M24 1027 47.56 0 1225968..1226438 - 156 157374168 - Ssed_1029 - peptidylprolyl isomerase, FKBP-type 1028 47.62 0 1226635..1226970 - 111 157374169 - Ssed_1030 - cold shock DNA-binding domain-containing protein 1029 48.77 0 1227131..1228426 - 431 157374170 - Ssed_1031 - Signal transduction histidine kinase-like protein 1030 48.64 0 1228423..1229121 - 232 157374171 - Ssed_1032 - response regulator 1031 48.53 0 1229186..1229560 - 124 157374172 - Ssed_1033 - hypothetical protein 1032 52.50 +1 1229557..1232217 - 886 157374173 - Ssed_1034 - PPE repeat-containing protein 1033 48.65 0 1232376..1232858 - 160 157374174 - Ssed_1035 - hypothetical protein 1034 49.61 0 1233026..1233283 + 85 157374175 - Ssed_1036 - MarR family transcriptional regulator 1035 50.94 +1 1233285..1233761 - 158 157374176 - Ssed_1037 - hypothetical protein 1036 48.77 0 1233988..1234920 + 310 157374177 - Ssed_1038 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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