IslandPathversion 1.0

IslandPath Analysis: Shewanella sediminis HAW-EB3



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 46.69 STD DEV: 3.68
Shewanella sediminis HAW-EB3, complete genome - 1..5517674
4497 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
651	 32.54	-2	793053..793304	-	83	157373792	-	Ssed_0652	-	hypothetical protein
652	 42.02	-1	793451..794290	-	279	157373793	-	Ssed_0653	-	hypothetical protein
653	 43.74	0	794301..795107	-	268	157373794	-	Ssed_0654	-	hypothetical protein
654	 41.46	-1	795270..796106	-	278	157373795	-	Ssed_0655	-	metal dependent phosphohydrolase
655	 38.41	-2	796208..797113	-	301	157373796	-	Ssed_0656	-	metal dependent phosphohydrolase
656	 39.74	-1	797161..797769	-	202	157373797	-	Ssed_0657	-	short chain dehydrogenase
657	 39.62	-1	797868..798773	+	301	157373798	-	Ssed_0658	-	LysR family transcriptional regulator
658	 49.88	0	799099..799503	+	134	157373799	-	Ssed_0659	-	hypothetical protein
659	 44.04	0	799872..801038	+	388	157373800	-	Ssed_0660	-	hypothetical protein
660	 47.69	0	801041..801862	+	273	157373801	-	Ssed_0661	-	hypothetical protein
661	 44.44	0	801920..802207	-	95	157373802	-	Ssed_0662	-	hypothetical protein
662	 43.91	0	802516..804519	-	667	157373803	-	Ssed_0663	-	beta-lactamase-like protein
663	 38.17	-2	804844..806475	-	543	157373804	-	Ssed_0664	-	Signal transduction histidine kinase-like protein
664	 51.95	+1	807005..807337	+	110	157373805	-	Ssed_0666	-	hypothetical protein
665	 44.44	0	807334..808557	+	407	157373806	-	Ssed_0667	-	hypothetical protein
666	 46.56	0	809009..810172	-	387	157373807	-	Ssed_0668	-	MFS transporter
667	 49.40	0	810236..810403	-	55	157373808	-	Ssed_0669	-	dehydrogenase
668	 44.09	0	810677..811615	+	312	157373809	-	Ssed_0670	-	LysR family transcriptional regulator
669	 40.37	-1	811748..812926	-	392	157373810	-	Ssed_0671	-	hypothetical protein
670	 50.00	0	813276..813983	-	235	157373811	-	Ssed_0672	-	NADH dehydrogenase
671	 45.63	0	814260..814511	-	83	157373812	-	Ssed_0673	-	hypothetical protein
672	 54.43	+2	814742..815125	+	127	157373813	-	Ssed_0674	-	hypothetical protein
673	 45.05	0	815282..815836	-	184	157373814	-	Ssed_0675	-	hypothetical protein
674	 50.96	+1	816689..817777	+	362	157373815	-	Ssed_0676	-	cysteine synthase A
675	 48.02	0	817848..818732	-	294	157373816	-	Ssed_0677	-	LysR family transcriptional regulator
676	 47.43	0	818868..819392	+	174	157373817	-	Ssed_0678	-	glyoxalase/bleomycin resistance protein/dioxygenase
677	 51.05	+1	819464..820942	-	492	157373818	-	Ssed_0679	-	Na+/H+ antiporter
678	 50.81	+1	821265..821756	+	163	157373819	-	Ssed_0680	-	peptidyl-prolyl cis-trans isomerase, cyclophilin type
679	 50.00	0	821871..822764	-	297	157373820	-	Ssed_0681	-	phospholipase A(1)
680	 51.00	+1	823041..823940	-	299	157373821	-	Ssed_0682	-	hypothetical protein
681	 50.60	+1	824164..824667	+	167	157373822	-	Ssed_0683	-	transcriptional regulator, MarR family protein
682	 45.45	0	824831..825226	+	131	157373823	-	Ssed_0684	-	chemotaxis protein CheY
683	 47.79	0	825385..826449	+	354	157373824	-	Ssed_0685	-	hypothetical protein
684	 44.37	0	826650..827111	+	153	157373825	-	Ssed_0686	-	heat shock protein HSP20
685	 51.73	+1	827789..829000	+	403	157373826	-	Ssed_0687	-	NnrS family protein
686	 50.39	+1	829072..830466	+	464	157373827	-	Ssed_0688	-	nitrite reductase (cytochrome; ammonia-forming)
687	 49.91	0	830658..831827	-	389	157373828	-	Ssed_0689	-	transport protein of the major facilitator
688	 45.72	0	832686..833444	+	252	157373829	-	Ssed_0690	-	LuxR family transcriptional regulator
689	 48.15	0	833448..834122	+	224	157373830	-	Ssed_0691	-	two component transcriptional regulator
690	 49.05	0	834112..835326	+	404	157373831	-	Ssed_0692	-	histidine kinase A domain-containing protein
691	 48.73	0	835800..836546	+	248	157373832	-	Ssed_0693	-	hypothetical protein
692	 50.03	0	836576..838330	+	584	157373833	-	Ssed_0694	-	fumarate reductase, flavoprotein subunit precursor
693	 50.69	+1	838408..839421	+	337	157373834	-	Ssed_0695	-	ApbE-like lipoprotein
694	 42.59	-1	839661..839984	-	107	157373835	-	Ssed_0696	-	hypothetical protein
695	 48.63	0	840563..841399	+	278	157373836	-	Ssed_0697	-	phosphate binding protein
696	 50.40	+1	841446..842324	+	292	157373837	-	Ssed_0698	-	phosphate transporter permease PstC
697	 49.50	0	842321..843217	+	298	157373838	-	Ssed_0699	-	binding-protein-dependent transport systems inner membrane component
698	 48.07	0	843211..843936	+	241	157373839	-	Ssed_0700	-	ABC transporter related
699	 48.65	0	844287..845324	+	345	157373840	-	Ssed_0701	-	helix-turn-helix-domain-containing protein
700	 50.84	+1	845421..847442	+	673	157373841	-	Ssed_0702	-	beta-lactamase-like protein
701	 49.89	0	847686..849062	+	458	157373842	-	Ssed_0703	-	fumarate hydratase
702	 50.92	+1	849115..850206	-	363	157373843	-	Ssed_0704	-	hypothetical protein
703	 49.91	0	850305..850883	+	192	157373844	-	Ssed_0705	-	lipase-like protein
704	 48.92	0	850989..851918	-	309	157373845	-	Ssed_0706	-	transporter DMT superfamily protein
705	 46.95	0	852274..853815	+	513	157373846	-	Ssed_0707	-	FG-GAP repeat-containing protein
706	 46.64	0	854106..855473	+	455	157373847	-	Ssed_0708	-	hypothetical protein
707	 50.52	+1	855530..856495	-	321	157373848	-	Ssed_0709	-	hypothetical protein
708	 51.72	+1	856652..857467	+	271	157373849	-	Ssed_0710	-	hypothetical protein
709	 46.81	0	857531..858799	-	422	157373850	-	Ssed_0711	-	integral membrane sensor signal transduction histidine kinase
710	 46.29	0	858799..859485	-	228	157373851	-	Ssed_0712	-	two component transcriptional regulator
711	 49.42	0	859613..860644	+	343	157373852	-	Ssed_0713	-	glycosyl transferase
712	 51.11	+1	860641..862035	+	464	157373853	-	Ssed_0714	-	hypothetical protein
713	 47.79	0	862023..862451	+	142	157373854	-	Ssed_0715	-	hypothetical protein
714	 47.28	0	862607..863287	+	226	157373855	-	Ssed_0716	-	OmpA/MotB domain-containing protein
715	 38.39	-2	864406..864840	+	144	157373856	-	Ssed_0717	-	hypothetical protein
716	 47.22	0	864928..865251	+	107	157373857	-	Ssed_0718	-	hypothetical protein
717	 41.93	-1	865305..865781	+	158	157373858	-	Ssed_0719	-	hypothetical protein
718	 41.42	-1	866179..866586	+	135	157373859	-	Ssed_0720	-	hypothetical protein
719	 49.23	0	867061..868425	-	454	157373860	-	Ssed_0721	-	magnesium transporter
720	 52.54	+1	868538..868813	-	91	157373861	-	Ssed_0722	-	phosphocarrier protein NPR
721	 44.88	0	868806..869654	-	282	157373862	-	Ssed_0723	-	hypothetical protein
722	 45.05	0	869651..870094	-	147	157373863	-	Ssed_0724	-	PTS IIA-like nitrogen-regulatory protein PtsN
723	 38.54	-2	870097..870384	-	95	157373864	-	Ssed_0725	-	sigma 54 modulation protein/ribosomal protein S30EA
724	 48.93	0	870451..871944	-	497	157373865	-	Ssed_0726	-	RNA polymerase factor sigma-54
725	 47.81	0	872085..872816	-	243	157373866	-	Ssed_0727	-	ABC transporter-related protein
726	 45.57	0	872813..873466	-	217	157373867	-	Ssed_0728	-	OstA family protein
727	 43.19	0	873453..874010	-	185	157373868	-	Ssed_0729	-	hypothetical protein
728	 47.28	0	874007..874558	-	183	157373869	-	Ssed_0730	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
729	 48.47	0	874646..875623	-	325	157373870	-	Ssed_0731	-	arabinose-5-phosphate isomerase
730	 48.85	0	875663..876622	-	319	157373871	-	Ssed_0732	-	CaCA family Na(+)/Ca(+) antiporter
731	 46.39	0	876900..877703	+	267	157373872	-	Ssed_0733	-	ABC transporter-related protein
732	 49.04	0	877768..878550	+	260	157373873	-	Ssed_0734	-	hypothetical protein
733	 42.46	-1	878607..879077	+	156	157373874	-	Ssed_0735	-	virulence factor MCE-like protein
734	 43.29	0	879081..879743	+	220	157373875	-	Ssed_0736	-	toluene tolerance family protein
735	 40.92	-1	879744..880046	+	100	157373876	-	Ssed_0737	-	SpoIIAA family protein
736	 41.92	-1	880051..880341	+	96	157373877	-	Ssed_0738	-	BolA family protein
737	 49.92	0	880355..881614	+	419	157373878	-	Ssed_0739	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
738	 47.98	0	881831..883243	+	470	157373879	-	Ssed_0740	-	Signal transduction histidine kinase-like protein
739	 43.60	0	883418..884050	+	210	157373880	-	Ssed_0741	-	response regulator receiver protein
740	 45.63	0	884247..885938	+	563	157373881	-	Ssed_0742	-	hypothetical protein
741	 47.97	0	886579..887664	-	361	157373882	-	Ssed_0743	-	2-alkenal reductase
742	 49.22	0	887802..889154	-	450	157373883	-	Ssed_0744	-	2-alkenal reductase
743	 45.07	0	889308..889682	-	124	157373884	-	Ssed_0745	-	hypothetical protein
744	 47.52	0	889873..890979	+	368	157373885	-	Ssed_0746	-	AFG1 family ATPase
745	 42.36	-1	891234..891665	+	143	157373886	-	Ssed_0747	-	50S ribosomal protein L13
746	 46.06	0	891680..892072	+	130	157373887	-	Ssed_0748	-	30S ribosomal protein S9
747	 39.77	-1	892237..892407	+	56	157373888	-	Ssed_0749	-	hypothetical protein
748	 47.61	0	892474..893769	+	431	157373889	-	Ssed_0750	-	adenylosuccinate synthetase
749	 46.35	0	893925..894608	+	227	157373890	-	Ssed_0751	-	Sel1 domain-containing protein
750	 49.36	0	894661..897162	+	833	157373891	-	Ssed_0752	-	exoribonuclease II
46.69	MEAN

3.68	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.