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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 651 32.54 -2 793053..793304 - 83 157373792 - Ssed_0652 - hypothetical protein 652 42.02 -1 793451..794290 - 279 157373793 - Ssed_0653 - hypothetical protein 653 43.74 0 794301..795107 - 268 157373794 - Ssed_0654 - hypothetical protein 654 41.46 -1 795270..796106 - 278 157373795 - Ssed_0655 - metal dependent phosphohydrolase 655 38.41 -2 796208..797113 - 301 157373796 - Ssed_0656 - metal dependent phosphohydrolase 656 39.74 -1 797161..797769 - 202 157373797 - Ssed_0657 - short chain dehydrogenase 657 39.62 -1 797868..798773 + 301 157373798 - Ssed_0658 - LysR family transcriptional regulator 658 49.88 0 799099..799503 + 134 157373799 - Ssed_0659 - hypothetical protein 659 44.04 0 799872..801038 + 388 157373800 - Ssed_0660 - hypothetical protein 660 47.69 0 801041..801862 + 273 157373801 - Ssed_0661 - hypothetical protein 661 44.44 0 801920..802207 - 95 157373802 - Ssed_0662 - hypothetical protein 662 43.91 0 802516..804519 - 667 157373803 - Ssed_0663 - beta-lactamase-like protein 663 38.17 -2 804844..806475 - 543 157373804 - Ssed_0664 - Signal transduction histidine kinase-like protein 664 51.95 +1 807005..807337 + 110 157373805 - Ssed_0666 - hypothetical protein 665 44.44 0 807334..808557 + 407 157373806 - Ssed_0667 - hypothetical protein 666 46.56 0 809009..810172 - 387 157373807 - Ssed_0668 - MFS transporter 667 49.40 0 810236..810403 - 55 157373808 - Ssed_0669 - dehydrogenase 668 44.09 0 810677..811615 + 312 157373809 - Ssed_0670 - LysR family transcriptional regulator 669 40.37 -1 811748..812926 - 392 157373810 - Ssed_0671 - hypothetical protein 670 50.00 0 813276..813983 - 235 157373811 - Ssed_0672 - NADH dehydrogenase 671 45.63 0 814260..814511 - 83 157373812 - Ssed_0673 - hypothetical protein 672 54.43 +2 814742..815125 + 127 157373813 - Ssed_0674 - hypothetical protein 673 45.05 0 815282..815836 - 184 157373814 - Ssed_0675 - hypothetical protein 674 50.96 +1 816689..817777 + 362 157373815 - Ssed_0676 - cysteine synthase A 675 48.02 0 817848..818732 - 294 157373816 - Ssed_0677 - LysR family transcriptional regulator 676 47.43 0 818868..819392 + 174 157373817 - Ssed_0678 - glyoxalase/bleomycin resistance protein/dioxygenase 677 51.05 +1 819464..820942 - 492 157373818 - Ssed_0679 - Na+/H+ antiporter 678 50.81 +1 821265..821756 + 163 157373819 - Ssed_0680 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 679 50.00 0 821871..822764 - 297 157373820 - Ssed_0681 - phospholipase A(1) 680 51.00 +1 823041..823940 - 299 157373821 - Ssed_0682 - hypothetical protein 681 50.60 +1 824164..824667 + 167 157373822 - Ssed_0683 - transcriptional regulator, MarR family protein 682 45.45 0 824831..825226 + 131 157373823 - Ssed_0684 - chemotaxis protein CheY 683 47.79 0 825385..826449 + 354 157373824 - Ssed_0685 - hypothetical protein 684 44.37 0 826650..827111 + 153 157373825 - Ssed_0686 - heat shock protein HSP20 685 51.73 +1 827789..829000 + 403 157373826 - Ssed_0687 - NnrS family protein 686 50.39 +1 829072..830466 + 464 157373827 - Ssed_0688 - nitrite reductase (cytochrome; ammonia-forming) 687 49.91 0 830658..831827 - 389 157373828 - Ssed_0689 - transport protein of the major facilitator 688 45.72 0 832686..833444 + 252 157373829 - Ssed_0690 - LuxR family transcriptional regulator 689 48.15 0 833448..834122 + 224 157373830 - Ssed_0691 - two component transcriptional regulator 690 49.05 0 834112..835326 + 404 157373831 - Ssed_0692 - histidine kinase A domain-containing protein 691 48.73 0 835800..836546 + 248 157373832 - Ssed_0693 - hypothetical protein 692 50.03 0 836576..838330 + 584 157373833 - Ssed_0694 - fumarate reductase, flavoprotein subunit precursor 693 50.69 +1 838408..839421 + 337 157373834 - Ssed_0695 - ApbE-like lipoprotein 694 42.59 -1 839661..839984 - 107 157373835 - Ssed_0696 - hypothetical protein 695 48.63 0 840563..841399 + 278 157373836 - Ssed_0697 - phosphate binding protein 696 50.40 +1 841446..842324 + 292 157373837 - Ssed_0698 - phosphate transporter permease PstC 697 49.50 0 842321..843217 + 298 157373838 - Ssed_0699 - binding-protein-dependent transport systems inner membrane component 698 48.07 0 843211..843936 + 241 157373839 - Ssed_0700 - ABC transporter related 699 48.65 0 844287..845324 + 345 157373840 - Ssed_0701 - helix-turn-helix-domain-containing protein 700 50.84 +1 845421..847442 + 673 157373841 - Ssed_0702 - beta-lactamase-like protein 701 49.89 0 847686..849062 + 458 157373842 - Ssed_0703 - fumarate hydratase 702 50.92 +1 849115..850206 - 363 157373843 - Ssed_0704 - hypothetical protein 703 49.91 0 850305..850883 + 192 157373844 - Ssed_0705 - lipase-like protein 704 48.92 0 850989..851918 - 309 157373845 - Ssed_0706 - transporter DMT superfamily protein 705 46.95 0 852274..853815 + 513 157373846 - Ssed_0707 - FG-GAP repeat-containing protein 706 46.64 0 854106..855473 + 455 157373847 - Ssed_0708 - hypothetical protein 707 50.52 +1 855530..856495 - 321 157373848 - Ssed_0709 - hypothetical protein 708 51.72 +1 856652..857467 + 271 157373849 - Ssed_0710 - hypothetical protein 709 46.81 0 857531..858799 - 422 157373850 - Ssed_0711 - integral membrane sensor signal transduction histidine kinase 710 46.29 0 858799..859485 - 228 157373851 - Ssed_0712 - two component transcriptional regulator 711 49.42 0 859613..860644 + 343 157373852 - Ssed_0713 - glycosyl transferase 712 51.11 +1 860641..862035 + 464 157373853 - Ssed_0714 - hypothetical protein 713 47.79 0 862023..862451 + 142 157373854 - Ssed_0715 - hypothetical protein 714 47.28 0 862607..863287 + 226 157373855 - Ssed_0716 - OmpA/MotB domain-containing protein 715 38.39 -2 864406..864840 + 144 157373856 - Ssed_0717 - hypothetical protein 716 47.22 0 864928..865251 + 107 157373857 - Ssed_0718 - hypothetical protein 717 41.93 -1 865305..865781 + 158 157373858 - Ssed_0719 - hypothetical protein 718 41.42 -1 866179..866586 + 135 157373859 - Ssed_0720 - hypothetical protein 719 49.23 0 867061..868425 - 454 157373860 - Ssed_0721 - magnesium transporter 720 52.54 +1 868538..868813 - 91 157373861 - Ssed_0722 - phosphocarrier protein NPR 721 44.88 0 868806..869654 - 282 157373862 - Ssed_0723 - hypothetical protein 722 45.05 0 869651..870094 - 147 157373863 - Ssed_0724 - PTS IIA-like nitrogen-regulatory protein PtsN 723 38.54 -2 870097..870384 - 95 157373864 - Ssed_0725 - sigma 54 modulation protein/ribosomal protein S30EA 724 48.93 0 870451..871944 - 497 157373865 - Ssed_0726 - RNA polymerase factor sigma-54 725 47.81 0 872085..872816 - 243 157373866 - Ssed_0727 - ABC transporter-related protein 726 45.57 0 872813..873466 - 217 157373867 - Ssed_0728 - OstA family protein 727 43.19 0 873453..874010 - 185 157373868 - Ssed_0729 - hypothetical protein 728 47.28 0 874007..874558 - 183 157373869 - Ssed_0730 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 729 48.47 0 874646..875623 - 325 157373870 - Ssed_0731 - arabinose-5-phosphate isomerase 730 48.85 0 875663..876622 - 319 157373871 - Ssed_0732 - CaCA family Na(+)/Ca(+) antiporter 731 46.39 0 876900..877703 + 267 157373872 - Ssed_0733 - ABC transporter-related protein 732 49.04 0 877768..878550 + 260 157373873 - Ssed_0734 - hypothetical protein 733 42.46 -1 878607..879077 + 156 157373874 - Ssed_0735 - virulence factor MCE-like protein 734 43.29 0 879081..879743 + 220 157373875 - Ssed_0736 - toluene tolerance family protein 735 40.92 -1 879744..880046 + 100 157373876 - Ssed_0737 - SpoIIAA family protein 736 41.92 -1 880051..880341 + 96 157373877 - Ssed_0738 - BolA family protein 737 49.92 0 880355..881614 + 419 157373878 - Ssed_0739 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 738 47.98 0 881831..883243 + 470 157373879 - Ssed_0740 - Signal transduction histidine kinase-like protein 739 43.60 0 883418..884050 + 210 157373880 - Ssed_0741 - response regulator receiver protein 740 45.63 0 884247..885938 + 563 157373881 - Ssed_0742 - hypothetical protein 741 47.97 0 886579..887664 - 361 157373882 - Ssed_0743 - 2-alkenal reductase 742 49.22 0 887802..889154 - 450 157373883 - Ssed_0744 - 2-alkenal reductase 743 45.07 0 889308..889682 - 124 157373884 - Ssed_0745 - hypothetical protein 744 47.52 0 889873..890979 + 368 157373885 - Ssed_0746 - AFG1 family ATPase 745 42.36 -1 891234..891665 + 143 157373886 - Ssed_0747 - 50S ribosomal protein L13 746 46.06 0 891680..892072 + 130 157373887 - Ssed_0748 - 30S ribosomal protein S9 747 39.77 -1 892237..892407 + 56 157373888 - Ssed_0749 - hypothetical protein 748 47.61 0 892474..893769 + 431 157373889 - Ssed_0750 - adenylosuccinate synthetase 749 46.35 0 893925..894608 + 227 157373890 - Ssed_0751 - Sel1 domain-containing protein 750 49.36 0 894661..897162 + 833 157373891 - Ssed_0752 - exoribonuclease II 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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