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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 600 42.86 -1 731730..732527 - 265 157373741 - Ssed_0601 - response regulator receiver protein 601 47.33 0 732625..733017 - 130 157373742 - Ssed_0602 - hypothetical protein 602 44.71 0 733132..733641 + 169 157373743 - Ssed_0603 - hypothetical protein 603 47.44 0 733711..734022 - 103 157373744 - Ssed_0604 - hypothetical protein 604 42.20 -1 734473..734754 - 93 157373745 - Ssed_0605 - hypothetical protein 605 44.12 0 734933..735238 - 101 157373746 - Ssed_0606 - hypothetical protein 606 44.00 0 735656..736180 + 174 157373747 - Ssed_0607 - hypothetical protein 607 43.59 0 736345..736656 - 103 157373748 - Ssed_0608 - hypothetical protein 608 47.85 0 736712..737593 + 293 157373749 - Ssed_0609 - GumN family protein 609 47.46 0 737723..738352 + 209 157373750 - Ssed_0610 - hypothetical protein 610 48.33 0 738591..739457 + 288 157373751 - Ssed_0611 - dehydratase 611 49.21 0 739740..741452 + 570 157373752 - Ssed_0612 - formate--tetrahydrofolate ligase 612 48.18 0 741683..743326 - 547 157373753 - Ssed_0613 - MscS mechanosensitive ion channel 613 47.62 0 743520..743855 + 111 157373754 - Ssed_0614 - hypothetical protein 614 49.31 0 744417..744704 + 95 157373755 - Ssed_0615 - hypothetical protein 615 50.67 +1 744827..746014 + 395 157373756 - Ssed_0616 - hypothetical protein 616 51.04 +1 745998..746912 + 304 157373757 - Ssed_0617 - periplasmic solute binding protein 617 47.97 0 746967..747827 + 286 157373758 - Ssed_0618 - ABC-3 protein 618 43.57 0 748056..748778 + 240 157373759 - Ssed_0619 - 1-acylglycerol-3-phosphate O-acyltransferase 619 42.89 -1 748876..749304 + 142 157373760 - Ssed_0620 - hypothetical protein 620 43.31 0 749405..750376 - 323 157373761 - Ssed_0621 - diguanylate cyclase 621 48.49 0 750391..751386 - 331 157373762 - Ssed_0622 - response regulator receiver protein 622 47.79 0 751797..752633 + 278 157373763 - Ssed_0623 - enoyl-CoA hydratase 623 48.07 0 752949..753830 - 293 157373764 - Ssed_0624 - hypothetical protein 624 49.47 0 753945..756851 - 968 157373765 - Ssed_0625 - ATP-dependent helicase HepA 625 47.46 0 757397..758791 + 464 157373766 - Ssed_0626 - PhoH family protein 626 49.40 0 759500..763102 + 1200 157373767 - Ssed_0627 - histidine kinase 627 52.37 +1 763415..765820 + 801 157373768 - Ssed_0628 - hypothetical protein 628 50.63 +1 766234..769320 - 1028 157373769 - Ssed_0629 - acriflavin resistance protein 629 50.14 0 769654..770748 - 364 157373770 - Ssed_0630 - RND family efflux transporter MFP subunit 630 49.79 0 770994..771941 + 315 157373771 - Ssed_0631 - carbonate dehydratase 631 53.30 +1 772074..772619 - 181 157373772 - Ssed_0632 - DNA-binding protein 632 45.83 0 772869..773036 + 55 157373773 - Ssed_0633 - hypothetical protein 633 47.04 0 773256..773678 + 140 157373774 - Ssed_0634 - hypothetical protein 634 43.23 0 773868..774170 + 100 157373775 - Ssed_0635 - hypothetical protein 635 49.72 0 774472..774825 - 117 157373776 - Ssed_0636 - hypothetical protein 636 49.29 0 774917..775411 - 164 157373777 - Ssed_0637 - hypothetical protein 637 51.63 +1 775637..776035 - 132 157373778 - Ssed_0638 - hypothetical protein 638 51.90 +1 776276..776932 - 218 157373779 - Ssed_0639 - hypothetical protein 639 51.14 +1 776993..778357 - 454 157373780 - Ssed_0640 - MATE efflux family protein 640 43.64 0 778589..778879 + 96 157373781 - Ssed_0641 - co-chaperonin GroES 641 49.09 0 778963..780612 + 549 157373782 - Ssed_0642 - chaperonin GroEL 642 39.94 -1 781024..783369 - 781 157373783 - Ssed_0643 - ATPase 643 42.45 -1 783434..784201 - 255 157373784 - Ssed_0644 - transposase InsF for insertion sequence IS3A/B/C/D/E/fA 644 44.90 0 784291..784584 - 97 157373785 - Ssed_0645 - ISxac3 transposase 645 42.98 -1 784628..784855 - 75 157373786 - Ssed_0646 - ATPase 646 47.55 0 784917..785570 - 217 157373787 - Ssed_0647 - cold-shock DNA-binding domain-containing protein 647 42.15 -1 785914..787092 + 392 157373788 - Ssed_0648 - ATPase central domain-containing protein 648 41.55 -1 787553..788209 + 218 157373789 - Ssed_0649 - hypothetical protein 649 48.67 0 788533..789171 + 212 157373790 - Ssed_0650 - hypothetical protein 650 45.82 0 789408..792611 + 1067 157373791 - Ssed_0651 - metal dependent phosphohydrolase 651 32.54 -2 793053..793304 - 83 157373792 - Ssed_0652 - hypothetical protein 652 42.02 -1 793451..794290 - 279 157373793 - Ssed_0653 - hypothetical protein 653 43.74 0 794301..795107 - 268 157373794 - Ssed_0654 - hypothetical protein 654 41.46 -1 795270..796106 - 278 157373795 - Ssed_0655 - metal dependent phosphohydrolase 655 38.41 -2 796208..797113 - 301 157373796 - Ssed_0656 - metal dependent phosphohydrolase 656 39.74 -1 797161..797769 - 202 157373797 - Ssed_0657 - short chain dehydrogenase 657 39.62 -1 797868..798773 + 301 157373798 - Ssed_0658 - LysR family transcriptional regulator 658 49.88 0 799099..799503 + 134 157373799 - Ssed_0659 - hypothetical protein 659 44.04 0 799872..801038 + 388 157373800 - Ssed_0660 - hypothetical protein 660 47.69 0 801041..801862 + 273 157373801 - Ssed_0661 - hypothetical protein 661 44.44 0 801920..802207 - 95 157373802 - Ssed_0662 - hypothetical protein 662 43.91 0 802516..804519 - 667 157373803 - Ssed_0663 - beta-lactamase-like protein 663 38.17 -2 804844..806475 - 543 157373804 - Ssed_0664 - Signal transduction histidine kinase-like protein 664 51.95 +1 807005..807337 + 110 157373805 - Ssed_0666 - hypothetical protein 665 44.44 0 807334..808557 + 407 157373806 - Ssed_0667 - hypothetical protein 666 46.56 0 809009..810172 - 387 157373807 - Ssed_0668 - MFS transporter 667 49.40 0 810236..810403 - 55 157373808 - Ssed_0669 - dehydrogenase 668 44.09 0 810677..811615 + 312 157373809 - Ssed_0670 - LysR family transcriptional regulator 669 40.37 -1 811748..812926 - 392 157373810 - Ssed_0671 - hypothetical protein 670 50.00 0 813276..813983 - 235 157373811 - Ssed_0672 - NADH dehydrogenase 671 45.63 0 814260..814511 - 83 157373812 - Ssed_0673 - hypothetical protein 672 54.43 +2 814742..815125 + 127 157373813 - Ssed_0674 - hypothetical protein 673 45.05 0 815282..815836 - 184 157373814 - Ssed_0675 - hypothetical protein 674 50.96 +1 816689..817777 + 362 157373815 - Ssed_0676 - cysteine synthase A 675 48.02 0 817848..818732 - 294 157373816 - Ssed_0677 - LysR family transcriptional regulator 676 47.43 0 818868..819392 + 174 157373817 - Ssed_0678 - glyoxalase/bleomycin resistance protein/dioxygenase 677 51.05 +1 819464..820942 - 492 157373818 - Ssed_0679 - Na+/H+ antiporter 678 50.81 +1 821265..821756 + 163 157373819 - Ssed_0680 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 679 50.00 0 821871..822764 - 297 157373820 - Ssed_0681 - phospholipase A(1) 680 51.00 +1 823041..823940 - 299 157373821 - Ssed_0682 - hypothetical protein 681 50.60 +1 824164..824667 + 167 157373822 - Ssed_0683 - transcriptional regulator, MarR family protein 682 45.45 0 824831..825226 + 131 157373823 - Ssed_0684 - chemotaxis protein CheY 683 47.79 0 825385..826449 + 354 157373824 - Ssed_0685 - hypothetical protein 684 44.37 0 826650..827111 + 153 157373825 - Ssed_0686 - heat shock protein HSP20 685 51.73 +1 827789..829000 + 403 157373826 - Ssed_0687 - NnrS family protein 686 50.39 +1 829072..830466 + 464 157373827 - Ssed_0688 - nitrite reductase (cytochrome; ammonia-forming) 687 49.91 0 830658..831827 - 389 157373828 - Ssed_0689 - transport protein of the major facilitator 688 45.72 0 832686..833444 + 252 157373829 - Ssed_0690 - LuxR family transcriptional regulator 689 48.15 0 833448..834122 + 224 157373830 - Ssed_0691 - two component transcriptional regulator 690 49.05 0 834112..835326 + 404 157373831 - Ssed_0692 - histidine kinase A domain-containing protein 691 48.73 0 835800..836546 + 248 157373832 - Ssed_0693 - hypothetical protein 692 50.03 0 836576..838330 + 584 157373833 - Ssed_0694 - fumarate reductase, flavoprotein subunit precursor 693 50.69 +1 838408..839421 + 337 157373834 - Ssed_0695 - ApbE-like lipoprotein 694 42.59 -1 839661..839984 - 107 157373835 - Ssed_0696 - hypothetical protein 695 48.63 0 840563..841399 + 278 157373836 - Ssed_0697 - phosphate binding protein 696 50.40 +1 841446..842324 + 292 157373837 - Ssed_0698 - phosphate transporter permease PstC 697 49.50 0 842321..843217 + 298 157373838 - Ssed_0699 - binding-protein-dependent transport systems inner membrane component 698 48.07 0 843211..843936 + 241 157373839 - Ssed_0700 - ABC transporter related 699 48.65 0 844287..845324 + 345 157373840 - Ssed_0701 - helix-turn-helix-domain-containing protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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