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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 515 37.80 -2 633107..633397 - 96 157373656 - Ssed_0515 - hypothetical protein 516 39.92 -1 633420..634361 - 313 157373657 - Ssed_0516 - formate-dependent nitrite reductase, nrfD protein 517 42.61 -1 634358..635047 - 229 157373658 - Ssed_0517 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 518 38.64 -2 635060..635530 - 156 157373659 - Ssed_0518 - hypothetical protein 519 33.54 -2 635613..636107 - 164 157373660 - Ssed_0519 - hypothetical protein 520 34.58 -2 636590..637555 + 321 157373661 - Ssed_0520 - LysR family transcriptional regulator 521 44.98 0 637776..638084 - 102 157373662 - Ssed_0521 - hypothetical protein 522 44.44 0 638859..639029 + 56 157373663 - Ssed_0523 - hypothetical protein 523 47.64 0 639199..640302 - 367 157373664 - Ssed_0524 - methyl-accepting chemotaxis protein 524 52.31 +1 640603..641556 + 317 157373665 - Ssed_0525 - Nitrilase 525 44.40 0 641660..642463 - 267 157373666 - Ssed_0526 - hypothetical protein 526 48.01 0 642520..644379 - 619 157373667 - Ssed_0527 - hypothetical protein 527 48.35 0 644770..645162 - 130 157373668 - Ssed_0528 - hypothetical protein 528 48.87 0 645332..647365 - 677 157373669 - Ssed_0529 - methyl-accepting chemotaxis protein-like protein 529 49.47 0 647610..648935 - 441 157373670 - Ssed_0530 - ATP-dependent protease ATP-binding subunit 530 47.81 0 649009..649533 - 174 157373671 - Ssed_0531 - ATP-dependent protease peptidase subunit 531 47.80 0 649764..650330 - 188 157373672 - Ssed_0532 - sporulation domain-containing protein 532 48.28 0 650433..652178 - 581 157373673 - Ssed_0533 - arginyl-tRNA synthetase 533 50.52 +1 652346..654574 - 742 157373674 - Ssed_0534 - primosomal protein N' 534 45.72 0 654629..655435 + 268 157373675 - Ssed_0535 - hypothetical protein 535 42.72 -1 655695..655907 + 70 157373676 - Ssed_0536 - 50S ribosomal protein L31 536 44.02 0 656060..656920 + 286 157373677 - Ssed_0537 - nuclease 537 47.04 0 657089..658336 + 415 157373678 - Ssed_0538 - malate dehydrogenase 538 46.21 0 658641..660551 + 636 157373679 - Ssed_0539 - regulatory protein CsrD 539 46.23 0 660903..661817 + 304 157373680 - Ssed_0540 - biogenesis protein MshI 540 48.20 0 661814..662425 + 203 157373681 - Ssed_0541 - fimbrial assembly family protein 541 44.70 0 662422..663072 + 216 157373682 - Ssed_0542 - MSHA biogenesis protein MshJ 542 46.44 0 663059..663409 + 116 157373683 - Ssed_0543 - MSHA biogenesis protein MshK 543 47.89 0 663406..665109 + 567 157373684 - Ssed_0544 - pilus (MSHA type) biogenesis protein MshL 544 49.06 0 665113..666021 + 302 157373685 - Ssed_0545 - MSHA biogenesis protein MshM 545 50.24 0 666018..667259 + 413 157373686 - Ssed_0546 - TPR repeat-containing protein 546 50.94 +1 667256..669010 + 584 157373687 - Ssed_0547 - type II secretion system protein E 547 52.58 +1 669099..670319 + 406 157373688 - Ssed_0548 - type II secretion system protein 548 48.08 0 670354..670875 + 173 157373689 - Ssed_0549 - hypothetical protein 549 45.51 0 670947..671603 + 218 157373690 - Ssed_0550 - methylation site containing protein 550 41.38 -1 671696..672217 + 173 157373691 - Ssed_0551 - MSHA pilin protein MshA 551 45.00 0 672263..672742 + 159 157373692 - Ssed_0552 - MSHA pilin protein MshA 552 48.50 0 672951..673418 + 155 157373693 - Ssed_0553 - MSHA pilin protein MshC 553 55.61 +2 673408..674004 + 198 157373694 - Ssed_0554 - methylation site containing protein 554 50.00 0 674004..674813 + 269 157373695 - Ssed_0555 - methylation site containing protein 555 55.56 +2 674803..675288 + 161 157373696 - Ssed_0556 - MSHA biogenesis protein MshP 556 47.85 0 675290..678010 + 906 157373697 - Ssed_0557 - MSHA biogenesis protein MshQ 557 52.29 +1 678219..679268 + 349 157373698 - Ssed_0558 - cell shape determining protein MreB 558 50.84 +1 679407..680303 + 298 157373699 - Ssed_0559 - rod shape-determining protein MreC 559 48.88 0 680300..680788 + 162 157373700 - Ssed_0560 - rod shape-determining protein MreD 560 49.75 0 680791..681387 + 198 157373701 - Ssed_0561 - maf protein 561 47.11 0 681497..682999 + 500 157373702 - Ssed_0562 - ribonuclease G 562 49.44 0 682999..687258 + 1419 157373703 - Ssed_0563 - hypothetical protein 563 49.76 0 687182..688027 + 281 157373704 - Ssed_0564 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 564 50.78 +1 688086..689558 + 490 157373705 - Ssed_0565 - peptidase U62, modulator of DNA gyrase 565 50.63 +1 689688..691109 + 473 157373706 - Ssed_0566 - outer membrane efflux protein 566 53.40 +1 691099..692070 + 323 157373707 - Ssed_0567 - secretion protein HlyD family protein 567 53.78 +1 692089..693252 + 387 157373708 - Ssed_0568 - ABC-2 type transporter 568 53.61 +1 693249..694397 + 382 157373709 - Ssed_0569 - ABC-2 type transporter 569 51.72 +1 694715..697270 - 851 157373710 - Ssed_0570 - Ig domain-containing protein 570 38.89 -2 697353..697892 - 179 157373711 - Ssed_0571 - hypothetical protein 571 48.77 0 698124..699464 + 446 157373712 - Ssed_0572 - peptidase U62, modulator of DNA gyrase 572 51.10 +1 699606..700106 + 166 157373713 - Ssed_0573 - MshA, mannose-sensitive haemaglutinin 573 52.75 +1 700340..700684 + 114 157373714 - Ssed_0574 - ArsR family transcriptional regulator 574 51.05 +1 700791..701840 + 349 157373715 - Ssed_0575 - arsenical-resistance protein 575 52.35 +1 701844..702905 + 353 157373716 - Ssed_0576 - glyceraldehyde-3-phosphate dehydrogenase 576 53.14 +1 703016..704257 + 413 157373717 - Ssed_0577 - major facilitator transporter 577 44.29 0 705085..705303 + 72 157373718 - Ssed_0578 - GCN5-related N-acetyltransferase 578 44.30 0 705321..706250 - 309 157373719 - Ssed_0579 - putative LysR-like regular protein 579 46.35 0 706356..707492 + 378 157373720 - Ssed_0580 - chromate resistance protein-related protein 580 38.39 -2 707643..709520 - 625 157373721 - Ssed_0581 - GGDEF domain-containing protein 581 44.98 0 709771..710268 + 165 157373722 - Ssed_0582 - GCN5-related N-acetyltransferase 582 39.02 -2 711267..711389 + 40 157373723 - Ssed_0583 - hypothetical protein 583 52.75 +1 712221..713600 + 459 157373724 - Ssed_0584 - amino acid carrier protein 584 50.54 +1 713851..714966 - 371 157373725 - Ssed_0585 - ABC-2 type transporter 585 52.34 +1 714968..715951 - 327 157373726 - Ssed_0586 - ABC transporter-related protein 586 50.90 +1 715948..716892 - 314 157373727 - Ssed_0587 - hypothetical protein 587 48.07 0 717378..718286 + 302 157373728 - Ssed_0588 - hypothetical protein 588 49.32 0 718427..719533 + 368 157373729 - Ssed_0589 - hypothetical protein 589 47.09 0 719671..720528 + 285 157373730 - Ssed_0590 - hypothetical protein 590 48.58 0 720630..721193 + 187 157373731 - Ssed_0591 - hypothetical protein 591 52.70 +1 721346..722806 + 486 157373732 - Ssed_0592 - methyl-accepting chemotaxis protein 592 50.81 +1 723065..724111 - 348 157373733 - Ssed_0593 - putative transcriptional regulator 593 52.18 +1 724186..725883 + 565 157373734 - Ssed_0594 - FAD linked oxidase domain-containing protein 594 51.81 +1 725880..727535 + 551 157373735 - Ssed_0595 - FAD dependent oxidoreductase 595 53.70 +1 727532..729097 + 521 157373736 - Ssed_0596 - sugar (pentulose and hexulose) kinase 596 39.49 -1 729208..729483 + 91 157373737 - Ssed_0597 - hypothetical protein 597 50.57 +1 729602..729775 - 57 157373738 - Ssed_0598 - hypothetical protein 598 44.73 0 730228..730920 - 230 157373739 - Ssed_0599 - hypothetical protein 599 42.12 -1 731198..731470 - 90 157373740 - Ssed_0600 - histone family protein DNA-binding protein 600 42.86 -1 731730..732527 - 265 157373741 - Ssed_0601 - response regulator receiver protein 601 47.33 0 732625..733017 - 130 157373742 - Ssed_0602 - hypothetical protein 602 44.71 0 733132..733641 + 169 157373743 - Ssed_0603 - hypothetical protein 603 47.44 0 733711..734022 - 103 157373744 - Ssed_0604 - hypothetical protein 604 42.20 -1 734473..734754 - 93 157373745 - Ssed_0605 - hypothetical protein 605 44.12 0 734933..735238 - 101 157373746 - Ssed_0606 - hypothetical protein 606 44.00 0 735656..736180 + 174 157373747 - Ssed_0607 - hypothetical protein 607 43.59 0 736345..736656 - 103 157373748 - Ssed_0608 - hypothetical protein 608 47.85 0 736712..737593 + 293 157373749 - Ssed_0609 - GumN family protein 609 47.46 0 737723..738352 + 209 157373750 - Ssed_0610 - hypothetical protein 610 48.33 0 738591..739457 + 288 157373751 - Ssed_0611 - dehydratase 611 49.21 0 739740..741452 + 570 157373752 - Ssed_0612 - formate--tetrahydrofolate ligase 612 48.18 0 741683..743326 - 547 157373753 - Ssed_0613 - MscS mechanosensitive ion channel 613 47.62 0 743520..743855 + 111 157373754 - Ssed_0614 - hypothetical protein 614 49.31 0 744417..744704 + 95 157373755 - Ssed_0615 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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