version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 471 41.59 -1 583416..583730 - 104 157373612 - Ssed_0471 - transposase IS3/IS911 472 37.90 -2 584339..585871 + 510 157373613 - Ssed_0472 - hypothetical protein 473 49.74 0 586226..586804 - 192 157373614 - Ssed_0473 - hypothetical protein 474 40.35 -1 586959..587186 - 75 157373615 - Ssed_0474 - hypothetical protein 475 50.59 +1 587565..589082 + 505 157373616 - Ssed_0475 - Na+/H+ antiporter NhaC 476 47.65 0 589131..591197 - 688 157373617 - Ssed_0476 - peptidase S9 prolyl oligopeptidase 477 43.22 0 591383..591898 + 171 157373618 - Ssed_0477 - hypothetical protein 478 47.42 0 591917..592129 + 70 157373619 - Ssed_0478 - XRE family transcriptional regulator 479 46.87 0 592264..592854 - 196 157373620 - Ssed_0479 - thioredoxin, putative 480 44.76 0 592835..593263 - 142 157373621 - Ssed_0480 - cytochrome c biogenesis protein 481 49.01 0 593260..595230 - 656 157373622 - Ssed_0481 - cytochrome c-type biogenesis protein CcmF 482 45.80 0 595777..597813 + 678 157373623 - Ssed_0482 - cytochrome c, putative 483 37.94 -2 597859..598314 + 151 157373624 - Ssed_0483 - rhodanese domain-containing protein 484 44.74 0 598369..599157 + 262 157373625 - Ssed_0484 - peptidylprolyl isomerase, FKBP-type 485 35.17 -2 599191..599898 + 235 157373626 - Ssed_0485 - cytochrome c biogenesis factor-like protein 486 45.82 0 599949..600653 + 234 157373627 - Ssed_0486 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 487 47.36 0 600656..601603 + 315 157373628 - Ssed_0487 - polysulphide reductase, NrfD 488 49.50 0 601920..602420 + 166 157373629 - Ssed_0488 - NosL family protein 489 47.12 0 602567..603799 + 410 157373630 - Ssed_0489 - periplasmic copper-binding 490 47.74 0 603793..604701 + 302 157373631 - Ssed_0490 - ABC transporter-related protein 491 45.95 0 604714..605553 + 279 157373632 - Ssed_0491 - copper ABC transporter, permease protein 492 46.34 0 605844..607127 + 427 157373633 - Ssed_0492 - transcriptional regulator, CadC 493 46.87 0 607731..609761 + 676 157373634 - Ssed_0493 - cytochrome c, putative 494 45.45 0 609839..610267 + 142 157373635 - Ssed_0494 - hypothetical protein 495 48.74 0 610330..611121 + 263 157373636 - Ssed_0495 - peptidylprolyl isomerase, FKBP-type 496 40.66 -1 611182..611904 + 240 157373637 - Ssed_0496 - TPR repeat-containing protein 497 47.82 0 611968..612678 + 236 157373638 - Ssed_0497 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 498 47.47 0 612681..613628 + 315 157373639 - Ssed_0498 - polysulphide reductase, NrfD 499 48.67 0 613800..614288 + 162 157373640 - Ssed_0499 - NosL protein 500 48.68 0 614295..615584 + 429 157373641 - Ssed_0500 - periplasmic copper-binding 501 44.19 0 615611..616513 + 300 157373642 - Ssed_0501 - ABC transporter-related protein 502 41.88 -1 616515..617345 + 276 157373643 - Ssed_0502 - copper ABC transporter, permease protein 503 44.31 0 617625..618908 + 427 157373644 - Ssed_0503 - transcriptional regulator, CadC 504 48.10 0 619041..619751 - 236 157373645 - Ssed_0504 - FMN reductase 505 51.69 +1 619832..621313 - 493 157373646 - Ssed_0505 - UbiD family decarboxylase 506 48.78 0 621781..622272 + 163 157373647 - Ssed_0506 - hypothetical protein 507 37.60 -2 622689..622946 + 85 157373648 - Ssed_0507 - toxin secretion, membrane fusion protein 508 46.18 0 623989..624969 + 326 157373649 - Ssed_0508 - putative CheW protein 509 50.85 +1 625017..625547 - 176 157373650 - Ssed_0509 - GCN5-related N-acetyltransferase 510 48.10 0 626137..626637 - 166 157373651 - Ssed_0510 - putative lipoprotein 511 49.96 0 627002..628204 + 400 157373652 - Ssed_0511 - putative tyrosine-specific transport protein 512 40.32 -1 629048..629992 + 314 157373653 - Ssed_0512 - transcriptional regulator-like protein 513 50.49 +1 630551..631477 + 308 157373654 - Ssed_0513 - cytochrome c, putative 514 47.25 0 631488..632033 + 181 157373655 - Ssed_0514 - hypothetical protein 515 37.80 -2 633107..633397 - 96 157373656 - Ssed_0515 - hypothetical protein 516 39.92 -1 633420..634361 - 313 157373657 - Ssed_0516 - formate-dependent nitrite reductase, nrfD protein 517 42.61 -1 634358..635047 - 229 157373658 - Ssed_0517 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 518 38.64 -2 635060..635530 - 156 157373659 - Ssed_0518 - hypothetical protein 519 33.54 -2 635613..636107 - 164 157373660 - Ssed_0519 - hypothetical protein 520 34.58 -2 636590..637555 + 321 157373661 - Ssed_0520 - LysR family transcriptional regulator 521 44.98 0 637776..638084 - 102 157373662 - Ssed_0521 - hypothetical protein 522 44.44 0 638859..639029 + 56 157373663 - Ssed_0523 - hypothetical protein 523 47.64 0 639199..640302 - 367 157373664 - Ssed_0524 - methyl-accepting chemotaxis protein 524 52.31 +1 640603..641556 + 317 157373665 - Ssed_0525 - Nitrilase 525 44.40 0 641660..642463 - 267 157373666 - Ssed_0526 - hypothetical protein 526 48.01 0 642520..644379 - 619 157373667 - Ssed_0527 - hypothetical protein 527 48.35 0 644770..645162 - 130 157373668 - Ssed_0528 - hypothetical protein 528 48.87 0 645332..647365 - 677 157373669 - Ssed_0529 - methyl-accepting chemotaxis protein-like protein 529 49.47 0 647610..648935 - 441 157373670 - Ssed_0530 - ATP-dependent protease ATP-binding subunit 530 47.81 0 649009..649533 - 174 157373671 - Ssed_0531 - ATP-dependent protease peptidase subunit 531 47.80 0 649764..650330 - 188 157373672 - Ssed_0532 - sporulation domain-containing protein 532 48.28 0 650433..652178 - 581 157373673 - Ssed_0533 - arginyl-tRNA synthetase 533 50.52 +1 652346..654574 - 742 157373674 - Ssed_0534 - primosomal protein N' 534 45.72 0 654629..655435 + 268 157373675 - Ssed_0535 - hypothetical protein 535 42.72 -1 655695..655907 + 70 157373676 - Ssed_0536 - 50S ribosomal protein L31 536 44.02 0 656060..656920 + 286 157373677 - Ssed_0537 - nuclease 537 47.04 0 657089..658336 + 415 157373678 - Ssed_0538 - malate dehydrogenase 538 46.21 0 658641..660551 + 636 157373679 - Ssed_0539 - regulatory protein CsrD 539 46.23 0 660903..661817 + 304 157373680 - Ssed_0540 - biogenesis protein MshI 540 48.20 0 661814..662425 + 203 157373681 - Ssed_0541 - fimbrial assembly family protein 541 44.70 0 662422..663072 + 216 157373682 - Ssed_0542 - MSHA biogenesis protein MshJ 542 46.44 0 663059..663409 + 116 157373683 - Ssed_0543 - MSHA biogenesis protein MshK 543 47.89 0 663406..665109 + 567 157373684 - Ssed_0544 - pilus (MSHA type) biogenesis protein MshL 544 49.06 0 665113..666021 + 302 157373685 - Ssed_0545 - MSHA biogenesis protein MshM 545 50.24 0 666018..667259 + 413 157373686 - Ssed_0546 - TPR repeat-containing protein 546 50.94 +1 667256..669010 + 584 157373687 - Ssed_0547 - type II secretion system protein E 547 52.58 +1 669099..670319 + 406 157373688 - Ssed_0548 - type II secretion system protein 548 48.08 0 670354..670875 + 173 157373689 - Ssed_0549 - hypothetical protein 549 45.51 0 670947..671603 + 218 157373690 - Ssed_0550 - methylation site containing protein 550 41.38 -1 671696..672217 + 173 157373691 - Ssed_0551 - MSHA pilin protein MshA 551 45.00 0 672263..672742 + 159 157373692 - Ssed_0552 - MSHA pilin protein MshA 552 48.50 0 672951..673418 + 155 157373693 - Ssed_0553 - MSHA pilin protein MshC 553 55.61 +2 673408..674004 + 198 157373694 - Ssed_0554 - methylation site containing protein 554 50.00 0 674004..674813 + 269 157373695 - Ssed_0555 - methylation site containing protein 555 55.56 +2 674803..675288 + 161 157373696 - Ssed_0556 - MSHA biogenesis protein MshP 556 47.85 0 675290..678010 + 906 157373697 - Ssed_0557 - MSHA biogenesis protein MshQ 557 52.29 +1 678219..679268 + 349 157373698 - Ssed_0558 - cell shape determining protein MreB 558 50.84 +1 679407..680303 + 298 157373699 - Ssed_0559 - rod shape-determining protein MreC 559 48.88 0 680300..680788 + 162 157373700 - Ssed_0560 - rod shape-determining protein MreD 560 49.75 0 680791..681387 + 198 157373701 - Ssed_0561 - maf protein 561 47.11 0 681497..682999 + 500 157373702 - Ssed_0562 - ribonuclease G 562 49.44 0 682999..687258 + 1419 157373703 - Ssed_0563 - hypothetical protein 563 49.76 0 687182..688027 + 281 157373704 - Ssed_0564 - nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 564 50.78 +1 688086..689558 + 490 157373705 - Ssed_0565 - peptidase U62, modulator of DNA gyrase 565 50.63 +1 689688..691109 + 473 157373706 - Ssed_0566 - outer membrane efflux protein 566 53.40 +1 691099..692070 + 323 157373707 - Ssed_0567 - secretion protein HlyD family protein 567 53.78 +1 692089..693252 + 387 157373708 - Ssed_0568 - ABC-2 type transporter 568 53.61 +1 693249..694397 + 382 157373709 - Ssed_0569 - ABC-2 type transporter 569 51.72 +1 694715..697270 - 851 157373710 - Ssed_0570 - Ig domain-containing protein 570 38.89 -2 697353..697892 - 179 157373711 - Ssed_0571 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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