version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 405 49.06 0 472911..474392 + 493 157373546 - Ssed_0405 - UDP-N-acetylmuramyl-tripeptide synthetase 406 48.68 0 474389..475756 + 455 157373547 - Ssed_0406 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase 407 46.54 0 475756..476838 + 360 157373548 - Ssed_0407 - phospho-N-acetylmuramoyl-pentapeptide-transferase 408 47.67 0 476911..478242 + 443 157373549 - Ssed_0408 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 409 47.36 0 478235..479467 + 410 157373550 - Ssed_0409 - cell division protein FtsW 410 48.91 0 479448..480545 + 365 157373551 - Ssed_0410 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 411 50.54 +1 480547..482016 + 489 157373552 - Ssed_0411 - UDP-N-acetylmuramate--alanine ligase 412 47.06 0 482148..482912 + 254 157373553 - Ssed_0412 - polypeptide-transport-associated domain-containing protein 413 46.44 0 482916..484151 + 411 157373554 - Ssed_0413 - cell division protein FtsA 414 47.87 0 484228..485403 + 391 157373555 - Ssed_0414 - cell division protein FtsZ 415 45.06 0 485604..486524 + 306 157373556 - Ssed_0415 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 416 45.03 0 486566..487018 - 150 157373557 - Ssed_0416 - hypothetical protein 417 45.67 0 487046..487945 + 299 157373558 - Ssed_0417 - peptidase M23B 418 45.59 0 488005..490728 + 907 157373559 - Ssed_0418 - preprotein translocase subunit SecA 419 43.59 0 512380..512769 - 129 157373560 - Ssed_0419 - mutator MutT protein 420 39.91 -1 512773..512985 - 70 157373561 - Ssed_0420 - hypothetical protein 421 40.27 -1 513065..513799 - 244 157373562 - Ssed_0421 - hypothetical protein 422 39.93 -1 513808..514413 - 201 157373563 - Ssed_0422 - dephospho-CoA kinase 423 44.63 0 514459..515370 - 303 157373564 - Ssed_0423 - prepilin peptidase 424 45.50 0 515443..516708 - 421 157373565 - Ssed_0424 - type II secretion system protein 425 47.84 0 516774..518483 - 569 157373566 - Ssed_0425 - type IV-A pilus assembly ATPase PilB 426 42.82 -1 518556..518966 - 136 157373567 - Ssed_0426 - methylation site containing protein 427 47.24 0 519719..520624 - 301 157373568 - Ssed_0427 - nicotinate-nucleotide diphosphorylase (carboxylating) 428 47.09 0 520949..521566 + 205 157373569 - Ssed_0428 - N-acetyl-anhydromuranmyl-L-alanine amidase 429 47.42 0 521706..522557 + 283 157373570 - Ssed_0429 - regulatory protein AmpE 430 49.27 0 522956..523708 + 250 157373571 - Ssed_0430 - transcriptional regulator PdhR 431 47.09 0 523795..526461 + 888 157373572 - Ssed_0431 - pyruvate dehydrogenase subunit E1 432 49.76 0 526474..528111 + 545 157373573 - Ssed_0432 - dihydrolipoyllysine-residue succinyltransferase 433 45.87 0 528266..529693 + 475 157373574 - Ssed_0433 - dihydrolipoamide dehydrogenase 434 44.46 0 529824..534281 + 1485 157373575 - Ssed_0434 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 435 45.83 0 534359..536614 + 751 157373576 - Ssed_0435 - patatin 436 46.33 0 536775..538829 + 684 157373577 - Ssed_0436 - endothelin-converting protein 1 437 45.65 0 539133..539798 - 221 157373578 - Ssed_0437 - 2-deoxyglucose-6-phosphatase 438 48.46 0 540214..542811 + 865 157373579 - Ssed_0438 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 439 43.16 0 542997..543464 - 155 157373580 - Ssed_0439 - anti-RNA polymerase sigma 70 factor 440 47.23 0 543991..545055 + 354 157373581 - Ssed_0440 - uroporphyrinogen decarboxylase 441 45.35 0 545598..548210 + 870 157373582 - Ssed_0441 - sensory box protein 442 48.68 0 548378..551380 - 1000 157373583 - Ssed_0442 - hypothetical protein 443 51.59 +1 551686..552978 - 430 157373584 - Ssed_0443 - phosphoribosylamine--glycine ligase 444 51.28 +1 553060..554664 - 534 157373585 - Ssed_0444 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 445 44.38 0 555335..555814 + 159 157373586 - Ssed_0445 - zinc-responsive transcriptional regulator 446 48.54 0 555817..557118 + 433 157373587 - Ssed_0446 - permease 447 48.50 0 557633..559471 + 612 157373588 - Ssed_0447 - hypothetical protein 448 47.23 0 559788..561824 + 678 157373589 - Ssed_0448 - peptidase 449 50.05 0 561951..562967 - 338 157373590 - Ssed_0449 - putative lipoprotein 450 48.29 0 563331..564059 - 242 157373591 - Ssed_0450 - hypothetical protein 451 50.11 0 564174..565103 - 309 157373592 - Ssed_0451 - LysR family transcriptional regulator 452 50.90 +1 565201..566259 + 352 157373593 - Ssed_0452 - secretion protein HlyD family protein 453 49.15 0 566263..567843 + 526 157373594 - Ssed_0453 - EmrB/QacA family drug resistance transporter 454 47.37 0 567971..568426 + 151 157373595 - Ssed_0454 - GCN5-related N-acetyltransferase 455 43.50 0 568499..568744 - 81 157373596 - Ssed_0455 - hypothetical protein 456 48.92 0 569096..570025 + 309 157373597 - Ssed_0456 - radical SAM domain-containing protein 457 44.84 0 570088..570921 - 277 157373598 - Ssed_0457 - MscS mechanosensitive ion channel 458 44.73 0 571153..571617 + 154 157373599 - Ssed_0458 - hypothetical protein 459 37.84 -2 571698..571919 - 73 157373600 - Ssed_0459 - hypothetical protein 460 40.00 -1 571921..572160 + 79 157373601 - Ssed_0460 - hypothetical protein 461 49.14 0 572328..573086 + 252 157373602 - Ssed_0461 - uridine phosphorylase 462 47.81 0 573219..573971 - 250 157373603 - Ssed_0462 - hypothetical protein 463 48.52 0 574310..574783 + 157 157373604 - Ssed_0463 - hypothetical protein 464 48.00 0 574914..575861 + 315 157373605 - Ssed_0464 - band 7 protein 465 49.36 0 575858..576793 + 311 157373606 - Ssed_0465 - band 7 protein 466 51.13 +1 577508..577861 + 117 157373607 - Ssed_0466 - L-PSP family endoribonuclease 467 51.34 +1 577962..580127 + 721 157373608 - Ssed_0467 - DNA-dependent helicase II 468 50.17 0 580211..581071 + 286 157373609 - Ssed_0468 - 4-hydroxybenzoate octaprenyltransferase 469 46.09 0 581370..582482 + 370 157373610 - Ssed_0469 - hypothetical protein 470 43.70 0 582559..583368 - 269 157373611 - Ssed_0470 - transposase 471 41.59 -1 583416..583730 - 104 157373612 - Ssed_0471 - transposase IS3/IS911 472 37.90 -2 584339..585871 + 510 157373613 - Ssed_0472 - hypothetical protein 473 49.74 0 586226..586804 - 192 157373614 - Ssed_0473 - hypothetical protein 474 40.35 -1 586959..587186 - 75 157373615 - Ssed_0474 - hypothetical protein 475 50.59 +1 587565..589082 + 505 157373616 - Ssed_0475 - Na+/H+ antiporter NhaC 476 47.65 0 589131..591197 - 688 157373617 - Ssed_0476 - peptidase S9 prolyl oligopeptidase 477 43.22 0 591383..591898 + 171 157373618 - Ssed_0477 - hypothetical protein 478 47.42 0 591917..592129 + 70 157373619 - Ssed_0478 - XRE family transcriptional regulator 479 46.87 0 592264..592854 - 196 157373620 - Ssed_0479 - thioredoxin, putative 480 44.76 0 592835..593263 - 142 157373621 - Ssed_0480 - cytochrome c biogenesis protein 481 49.01 0 593260..595230 - 656 157373622 - Ssed_0481 - cytochrome c-type biogenesis protein CcmF 482 45.80 0 595777..597813 + 678 157373623 - Ssed_0482 - cytochrome c, putative 483 37.94 -2 597859..598314 + 151 157373624 - Ssed_0483 - rhodanese domain-containing protein 484 44.74 0 598369..599157 + 262 157373625 - Ssed_0484 - peptidylprolyl isomerase, FKBP-type 485 35.17 -2 599191..599898 + 235 157373626 - Ssed_0485 - cytochrome c biogenesis factor-like protein 486 45.82 0 599949..600653 + 234 157373627 - Ssed_0486 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 487 47.36 0 600656..601603 + 315 157373628 - Ssed_0487 - polysulphide reductase, NrfD 488 49.50 0 601920..602420 + 166 157373629 - Ssed_0488 - NosL family protein 489 47.12 0 602567..603799 + 410 157373630 - Ssed_0489 - periplasmic copper-binding 490 47.74 0 603793..604701 + 302 157373631 - Ssed_0490 - ABC transporter-related protein 491 45.95 0 604714..605553 + 279 157373632 - Ssed_0491 - copper ABC transporter, permease protein 492 46.34 0 605844..607127 + 427 157373633 - Ssed_0492 - transcriptional regulator, CadC 493 46.87 0 607731..609761 + 676 157373634 - Ssed_0493 - cytochrome c, putative 494 45.45 0 609839..610267 + 142 157373635 - Ssed_0494 - hypothetical protein 495 48.74 0 610330..611121 + 263 157373636 - Ssed_0495 - peptidylprolyl isomerase, FKBP-type 496 40.66 -1 611182..611904 + 240 157373637 - Ssed_0496 - TPR repeat-containing protein 497 47.82 0 611968..612678 + 236 157373638 - Ssed_0497 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 498 47.47 0 612681..613628 + 315 157373639 - Ssed_0498 - polysulphide reductase, NrfD 499 48.67 0 613800..614288 + 162 157373640 - Ssed_0499 - NosL protein 500 48.68 0 614295..615584 + 429 157373641 - Ssed_0500 - periplasmic copper-binding 501 44.19 0 615611..616513 + 300 157373642 - Ssed_0501 - ABC transporter-related protein 502 41.88 -1 616515..617345 + 276 157373643 - Ssed_0502 - copper ABC transporter, permease protein 503 44.31 0 617625..618908 + 427 157373644 - Ssed_0503 - transcriptional regulator, CadC 504 48.10 0 619041..619751 - 236 157373645 - Ssed_0504 - FMN reductase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0