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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3946 53.05 +1 4833917..4835098 + 393 157377087 - Ssed_3955 - hypothetical protein 3947 48.24 0 4835499..4835753 + 84 157377088 - Ssed_3956 - NapD family protein 3948 50.26 0 4835828..4838308 + 826 157377089 - Ssed_3957 - nitrate reductase 3949 50.88 +1 4838379..4839113 + 244 157377090 - Ssed_3958 - quinol dehydrogenase periplasmic component 3950 50.28 0 4839110..4840018 + 302 157377091 - Ssed_3959 - quinol dehydrogenase membrane component 3951 48.92 0 4840015..4840431 + 138 157377092 - Ssed_3960 - nitrate reductase cytochrome c-type subunit (NapB) 3952 48.09 0 4840552..4841574 - 340 157377093 - Ssed_3961 - diguanylate cyclase 3953 51.18 +1 4841853..4844441 + 862 157377094 - Ssed_3962 - ATPase, P-type (transporting), HAD superfamily, subfamily IC 3954 47.34 0 4844395..4845279 - 294 157377095 - Ssed_3963 - hypothetical protein 3955 52.61 +1 4845402..4846610 + 402 157377096 - Ssed_3964 - sodium/hydrogen exchanger 3956 41.76 -1 4846844..4847104 + 86 157377097 - Ssed_3965 - hypothetical protein 3957 47.85 0 4847213..4848583 - 456 157377098 - Ssed_3966 - alpha-L-glutamate ligase 3958 48.07 0 4848849..4853402 - 1517 157377099 - Ssed_3967 - carbamoyl-phosphate synthase L chain, ATP-binding 3959 48.57 0 4853524..4854435 + 303 157377100 - Ssed_3968 - LysR family transcriptional regulator 3960 48.51 0 4855081..4856253 + 390 157377101 - Ssed_3969 - hypothetical protein 3961 48.61 0 4856335..4856910 + 191 157377102 - Ssed_3970 - protein of unknown function DUF335, SprT 3962 46.96 0 4857133..4857888 + 251 157377103 - Ssed_3971 - deoxyribonuclease I 3963 48.22 0 4857896..4858627 + 243 157377104 - Ssed_3972 - hypothetical protein 3964 50.26 0 4858698..4859648 + 316 157377105 - Ssed_3973 - glutathione synthetase 3965 48.40 0 4859659..4861032 + 457 157377106 - Ssed_3974 - alkaline phosphatase 3966 46.60 0 4861067..4863553 - 828 157377107 - Ssed_3975 - diguanylate cyclase/phosphodiesterase 3967 47.46 0 4863558..4864739 - 393 157377108 - Ssed_3976 - hypothetical protein 3968 46.38 0 4864723..4865136 - 137 157377109 - Ssed_3977 - hypothetical protein 3969 43.41 0 4865578..4866609 + 343 157377110 - Ssed_3978 - rRNA (guanine-N(2)-)-methyltransferase 3970 45.36 0 4866815..4868485 + 556 157377111 - Ssed_3979 - hypothetical protein 3971 45.95 0 4868650..4869822 + 390 157377112 - Ssed_3980 - peptidase M50 3972 43.20 0 4869972..4870934 + 320 157377113 - Ssed_3981 - LysR family transcriptional regulator 3973 50.05 0 4871181..4874261 - 1026 157377114 - Ssed_3982 - molydopterin dinucleotide-binding region 3974 49.09 0 4874266..4874982 - 238 157377115 - Ssed_3983 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3975 44.37 0 4874992..4875888 - 298 157377116 - Ssed_3984 - polysulphide reductase, NrfD 3976 46.46 0 4876511..4877188 + 225 157377117 - Ssed_3985 - hypothetical protein 3977 43.58 0 4877720..4879105 - 461 157377118 - Ssed_3986 - phosphatidylserine decarboxylase 3978 42.62 -1 4879347..4880498 + 383 157377119 - Ssed_3987 - arylsulfatase regulator (Fe-S oxidoreductase) 3979 43.93 0 4880602..4881507 + 301 157377120 - Ssed_3988 - putative transcriptional regulator SyrB 3980 48.10 0 4881722..4883143 + 473 157377121 - Ssed_3989 - hypothetical protein 3981 49.23 0 4883183..4884736 + 517 157377122 - Ssed_3990 - sulfatase family protein 3982 44.60 0 4884791..4885429 + 212 157377123 - Ssed_3991 - hypothetical protein 3983 45.69 0 4885570..4886670 + 366 157377124 - Ssed_3992 - RND efflux system membrane fusion protein 3984 48.05 0 4886670..4889747 + 1025 157377125 - Ssed_3993 - AcrB/AcrD/AcrF family metabolite exporter 3985 47.85 0 4889774..4890889 + 371 157377126 - Ssed_3994 - long-chain fatty acid ABC transporter 3986 55.01 +2 4891430..4893394 - 654 157377127 - Ssed_3995 - hypothetical protein 3987 48.39 0 4893419..4893976 - 185 157377128 - Ssed_3996 - hypothetical protein 3988 49.54 0 4894330..4895082 + 250 157377129 - Ssed_3997 - hypothetical protein 3989 39.53 -1 4895747..4896505 - 252 157377130 - Ssed_3998 - hypothetical protein 3990 45.77 0 4896767..4897369 + 200 157377131 - Ssed_3999 - putative disulfide isomerase 3991 46.32 0 4897378..4898016 + 212 157377132 - Ssed_4000 - disulfide bond formation protein 3992 47.24 0 4898273..4900048 + 591 157377133 - Ssed_4001 - arylsulfate sulfotransferase 3993 43.55 0 4900105..4900887 + 260 157377134 - Ssed_4002 - hypothetical protein 3994 35.66 -2 4901524..4901652 + 42 157377135 - Ssed_4003 - hypothetical protein 3995 42.97 -1 4901816..4902427 - 203 157377136 - Ssed_4004 - hypothetical protein 3996 42.12 -1 4902667..4904304 + 545 157377137 - Ssed_4005 - integral membrane sensor signal transduction histidine kinase 3997 45.53 0 4904336..4905565 - 409 157377138 - Ssed_4006 - peptidase T 3998 50.61 +1 4905837..4906652 - 271 157377139 - Ssed_4007 - UBA/ThiF-type NAD/FAD binding protein 3999 47.14 0 4907148..4908212 + 354 157377140 - Ssed_4008 - porin 4000 45.48 0 4908815..4909843 + 342 157377141 - Ssed_4009 - porin 4001 46.99 0 4909940..4910620 - 226 157377142 - Ssed_4010 - thiopurine S-methyltransferase 4002 42.03 -1 4910815..4911159 - 114 157377143 - Ssed_4011 - hypothetical protein 4003 49.04 0 4911460..4913280 + 606 157377144 - Ssed_4012 - serine/threonine protein kinase 4004 49.83 0 4913292..4913867 - 191 157377145 - Ssed_4013 - FxsA cytoplasmic membrane protein 4005 45.13 0 4914165..4914503 + 112 157377146 - Ssed_4014 - CutA1 divalent ion tolerance protein 4006 50.16 0 4914500..4916335 + 611 157377147 - Ssed_4015 - thiol:disulfide interchange protein precursor 4007 48.71 0 4916606..4918231 + 541 157377148 - Ssed_4016 - sodium/hydrogen exchanger 4008 50.79 +1 4918311..4919381 + 356 157377149 - Ssed_4017 - hypothetical protein 4009 50.91 +1 4919430..4922609 + 1059 157377150 - Ssed_4018 - beta-galactosidase 4010 50.25 0 4922690..4924114 + 474 157377151 - Ssed_4019 - SSS family solute/sodium (Na+) symporter 4011 52.78 +1 4924342..4925508 + 388 157377152 - Ssed_4020 - galactokinase 4012 49.51 0 4925581..4926600 + 339 157377153 - Ssed_4021 - aldose 1-epimerase 4013 45.61 0 4926658..4927113 - 151 157377154 - Ssed_4022 - hypothetical protein 4014 52.60 +1 4927590..4928627 - 345 157377155 - Ssed_4023 - alcohol dehydrogenase 4015 47.83 0 4928800..4930662 - 620 157377156 - Ssed_4024 - hypothetical protein 4016 51.87 +1 4930999..4931694 - 231 157377157 - Ssed_4025 - single-strand binding protein 4017 49.49 0 4931825..4933192 - 455 157377158 - Ssed_4026 - major facilitator transporter 4018 50.95 +1 4933462..4936299 + 945 157377159 - Ssed_4027 - excinuclease ABC, A subunit 4019 49.44 0 4936532..4937593 + 353 157377160 - Ssed_4028 - peptidase M28 4020 47.85 0 4937831..4939663 + 610 157377161 - Ssed_4029 - DEAD/DEAH box helicase domain-containing protein 4021 45.39 0 4939986..4940939 + 317 157377162 - Ssed_4030 - hypothetical protein 4022 48.43 0 4941004..4941546 - 180 157377163 - Ssed_4031 - glyoxalase/bleomycin resistance protein/dioxygenase 4023 45.81 0 4941739..4942227 + 162 157377164 - Ssed_4032 - transcriptional regulatory protein 4024 39.48 -1 4942231..4942653 - 140 157377165 - Ssed_4033 - hypothetical protein 4025 40.44 -1 4942997..4943404 + 135 157377166 - Ssed_4034 - hypothetical protein 4026 43.29 0 4943828..4944661 + 277 157377167 - Ssed_4035 - Sel1 domain-containing protein 4027 46.33 0 4944704..4945534 - 276 157377168 - Ssed_4036 - hypothetical protein 4028 47.26 0 4945596..4945832 - 78 157377169 - Ssed_4037 - hypothetical protein 4029 44.71 0 4946073..4946450 - 125 157377170 - Ssed_4038 - hypothetical protein 4030 49.72 0 4946849..4947739 - 296 157377171 - Ssed_4039 - 5,10-methylenetetrahydrofolate reductase 4031 51.72 +1 4948243..4950630 - 795 157377172 - Ssed_4040 - bifunctional aspartate kinase II/homoserine dehydrogenase II 4032 50.99 +1 4950643..4951803 - 386 157377173 - Ssed_4041 - cystathionine gamma-synthase 4033 45.40 0 4952037..4952351 + 104 157377174 - Ssed_4042 - transcriptional repressor protein MetJ 4034 48.84 0 4952473..4953207 + 244 157377175 - Ssed_4043 - hypothetical protein 4035 47.11 0 4953204..4954277 - 357 157377176 - Ssed_4044 - putative plasmid transfer protein 4036 52.34 +1 4954488..4955429 - 313 157377177 - Ssed_4045 - polysulfide reductase, subunit C 4037 51.31 +1 4955426..4955998 - 190 157377178 - Ssed_4046 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 4038 52.61 +1 4956011..4958293 - 760 157377179 - Ssed_4047 - molybdopterin oxidoreductase 4039 51.40 +1 4958725..4960185 + 486 157377180 - Ssed_4048 - radical SAM family Fe-S protein 4040 49.53 0 4960201..4961157 + 318 157377181 - Ssed_4049 - hypothetical protein 4041 52.04 +1 4961154..4961939 + 261 157377182 - Ssed_4050 - methylase involved in ubiquinone/menaquinone biosynthesis-like protein 4042 49.26 0 4962039..4962377 - 112 157377183 - Ssed_4051 - hypothetical protein 4043 53.93 +1 4962456..4963601 - 381 157377184 - Ssed_4052 - nitric oxide reductase 4044 51.24 +1 4963598..4965094 - 498 157377185 - Ssed_4053 - anaerobic nitric oxide reductase flavorubredoxin 4045 42.42 -1 4965487..4965684 + 65 157377186 - Ssed_4054 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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