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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 349 50.16 0 405205..405840 - 211 157373490 - Ssed_0349 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 350 51.81 +1 405853..408282 - 809 157373491 - Ssed_0350 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 351 51.47 +1 408323..410329 - 668 157373492 - Ssed_0351 - outer membrane protein 352 50.00 0 410345..411298 - 317 157373493 - Ssed_0352 - cytochrome c family protein 353 50.95 +1 412077..413807 - 576 157373494 - Ssed_0353 - OPT family oligopeptide transporter 354 39.83 -1 414104..414796 + 230 157373495 - Ssed_0354 - hypothetical protein 355 45.48 0 414994..415314 - 106 157373496 - Ssed_0355 - hypothetical protein 356 44.61 0 415350..415970 - 206 157373497 - Ssed_0356 - cytoplasmic chaperone TorD family protein 357 47.79 0 416026..418128 - 700 157373498 - Ssed_0357 - hypothetical protein 358 48.54 0 418130..418747 - 205 157373499 - Ssed_0358 - anaerobic dimethyl sulfoxide reductase, subunit B 359 49.78 0 418758..421208 - 816 157373500 - Ssed_0359 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 360 49.35 0 421242..422939 - 565 157373501 - Ssed_0360 - hypothetical protein 361 49.25 0 422949..423809 - 286 157373502 - Ssed_0361 - decaheme cytochrome c MtrA 362 45.07 0 424401..425414 - 337 157373503 - Ssed_0362 - integrase, catalytic region 363 47.28 0 425452..427050 - 532 157373504 - Ssed_0363 - sodium/sulphate symporter 364 43.08 0 427389..428024 + 211 157373505 - Ssed_0364 - hypothetical protein 365 43.74 0 428039..428509 + 156 157373506 - Ssed_0365 - adenylate cyclase 366 42.31 -1 428526..429851 + 441 157373507 - Ssed_0366 - hypothetical protein 367 43.31 0 430127..431479 + 450 157373508 - Ssed_0367 - phosphate-selective porin O and P 368 41.33 -1 431489..432313 + 274 157373509 - Ssed_0368 - hypothetical protein 369 34.68 -2 432396..433064 + 222 157373510 - Ssed_0369 - hypothetical protein 370 45.69 0 433077..434120 + 347 157373511 - Ssed_0370 - phosphate transporter 371 46.03 0 435056..436882 + 608 157373512 - Ssed_0371 - hypothetical protein 372 47.17 0 437011..438036 + 341 157373513 - Ssed_0372 - putative manganese-dependent inorganic pyrophosphatase 373 48.87 0 438266..438928 + 220 157373514 - Ssed_0373 - adenylate kinase 374 41.94 -1 439043..439681 - 212 157373515 - Ssed_0374 - ERCC4 domain-containing protein 375 43.60 0 439843..441147 - 434 157373516 - Ssed_0375 - HipA domain-containing protein 376 42.97 -1 441134..441382 - 82 157373517 - Ssed_0376 - XRE family transcriptional regulator 377 48.96 0 441797..442660 - 287 157373518 - Ssed_0377 - hypothetical protein 378 49.72 0 442841..443554 + 237 157373519 - Ssed_0378 - tRNA nucleotidyltransferase 379 49.07 0 443641..444282 + 213 157373520 - Ssed_0379 - orotate phosphoribosyltransferase 380 46.36 0 444582..445241 - 219 157373521 - Ssed_0380 - GTP cyclohydrolase I 381 44.94 0 445480..447444 - 654 157373522 - Ssed_0381 - peptidase S9 prolyl oligopeptidase 382 46.30 0 447863..448456 - 197 157373523 - Ssed_0382 - nucleoid occlusion protein 383 49.02 0 448601..449059 - 152 157373524 - Ssed_0383 - deoxyuridine 5'-triphosphate nucleotidohydrolase 384 51.04 +1 449056..450258 - 400 157373525 - Ssed_0384 - phosphopantothenoylcysteine decarboxylase, phosphopantothenate--cysteine ligase 385 46.61 0 450403..451080 + 225 157373526 - Ssed_0385 - DNA repair protein RadC 386 43.04 0 451208..451444 + 78 157373527 - Ssed_0386 - ribosomal protein L28 387 36.78 -2 451451..451624 + 57 157373528 - Ssed_0387 - 50S ribosomal protein L33 388 47.05 0 451913..453232 + 439 157373529 - Ssed_0388 - N-acetylglutamate synthase 389 47.49 0 453603..454499 - 298 157373530 - Ssed_0389 - rarD protein 390 49.03 0 454745..455209 - 154 157373531 - Ssed_0390 - hypothetical protein 391 48.85 0 455509..457332 + 607 157373532 - Ssed_0391 - ATP-dependent DNA helicase RecQ 392 43.32 0 457338..459089 - 583 157373533 - Ssed_0392 - response regulator receiver protein 393 47.84 0 459605..461176 + 523 157373534 - Ssed_0393 - 2-isopropylmalate synthase 394 50.32 0 461233..462327 + 364 157373535 - Ssed_0394 - 3-isopropylmalate dehydrogenase 395 51.75 +1 462332..463732 + 466 157373536 - Ssed_0395 - isopropylmalate isomerase large subunit 396 48.35 0 463746..464351 + 201 157373537 - Ssed_0396 - isopropylmalate isomerase small subunit 397 49.03 0 464841..466178 + 445 157373538 - Ssed_0397 - long-chain fatty acid transport protein 398 45.58 0 466420..466917 + 165 157373539 - Ssed_0398 - hypothetical protein 399 49.06 0 466976..468463 + 495 157373540 - Ssed_0399 - glycerol kinase 400 52.15 +1 468533..468835 - 100 157373541 - Ssed_0400 - hypothetical protein 401 45.53 0 469277..469735 + 152 157373542 - Ssed_0401 - cell division protein MraZ 402 46.98 0 469763..470707 + 314 157373543 - Ssed_0402 - S-adenosyl-methyltransferase MraW 403 48.25 0 470784..471098 + 104 157373544 - Ssed_0403 - cell division protein FtsL 404 48.82 0 471175..472911 + 578 157373545 - Ssed_0404 - peptidoglycan glycosyltransferase 405 49.06 0 472911..474392 + 493 157373546 - Ssed_0405 - UDP-N-acetylmuramyl-tripeptide synthetase 406 48.68 0 474389..475756 + 455 157373547 - Ssed_0406 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl- D-alanyl ligase 407 46.54 0 475756..476838 + 360 157373548 - Ssed_0407 - phospho-N-acetylmuramoyl-pentapeptide-transferase 408 47.67 0 476911..478242 + 443 157373549 - Ssed_0408 - UDP-N-acetylmuramoylalanine--D-glutamate ligase 409 47.36 0 478235..479467 + 410 157373550 - Ssed_0409 - cell division protein FtsW 410 48.91 0 479448..480545 + 365 157373551 - Ssed_0410 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase 411 50.54 +1 480547..482016 + 489 157373552 - Ssed_0411 - UDP-N-acetylmuramate--alanine ligase 412 47.06 0 482148..482912 + 254 157373553 - Ssed_0412 - polypeptide-transport-associated domain-containing protein 413 46.44 0 482916..484151 + 411 157373554 - Ssed_0413 - cell division protein FtsA 414 47.87 0 484228..485403 + 391 157373555 - Ssed_0414 - cell division protein FtsZ 415 45.06 0 485604..486524 + 306 157373556 - Ssed_0415 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 416 45.03 0 486566..487018 - 150 157373557 - Ssed_0416 - hypothetical protein 417 45.67 0 487046..487945 + 299 157373558 - Ssed_0417 - peptidase M23B 418 45.59 0 488005..490728 + 907 157373559 - Ssed_0418 - preprotein translocase subunit SecA 419 43.59 0 512380..512769 - 129 157373560 - Ssed_0419 - mutator MutT protein 420 39.91 -1 512773..512985 - 70 157373561 - Ssed_0420 - hypothetical protein 421 40.27 -1 513065..513799 - 244 157373562 - Ssed_0421 - hypothetical protein 422 39.93 -1 513808..514413 - 201 157373563 - Ssed_0422 - dephospho-CoA kinase 423 44.63 0 514459..515370 - 303 157373564 - Ssed_0423 - prepilin peptidase 424 45.50 0 515443..516708 - 421 157373565 - Ssed_0424 - type II secretion system protein 425 47.84 0 516774..518483 - 569 157373566 - Ssed_0425 - type IV-A pilus assembly ATPase PilB 426 42.82 -1 518556..518966 - 136 157373567 - Ssed_0426 - methylation site containing protein 427 47.24 0 519719..520624 - 301 157373568 - Ssed_0427 - nicotinate-nucleotide diphosphorylase (carboxylating) 428 47.09 0 520949..521566 + 205 157373569 - Ssed_0428 - N-acetyl-anhydromuranmyl-L-alanine amidase 429 47.42 0 521706..522557 + 283 157373570 - Ssed_0429 - regulatory protein AmpE 430 49.27 0 522956..523708 + 250 157373571 - Ssed_0430 - transcriptional regulator PdhR 431 47.09 0 523795..526461 + 888 157373572 - Ssed_0431 - pyruvate dehydrogenase subunit E1 432 49.76 0 526474..528111 + 545 157373573 - Ssed_0432 - dihydrolipoyllysine-residue succinyltransferase 433 45.87 0 528266..529693 + 475 157373574 - Ssed_0433 - dihydrolipoamide dehydrogenase 434 44.46 0 529824..534281 + 1485 157373575 - Ssed_0434 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 435 45.83 0 534359..536614 + 751 157373576 - Ssed_0435 - patatin 436 46.33 0 536775..538829 + 684 157373577 - Ssed_0436 - endothelin-converting protein 1 437 45.65 0 539133..539798 - 221 157373578 - Ssed_0437 - 2-deoxyglucose-6-phosphatase 438 48.46 0 540214..542811 + 865 157373579 - Ssed_0438 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 439 43.16 0 542997..543464 - 155 157373580 - Ssed_0439 - anti-RNA polymerase sigma 70 factor 440 47.23 0 543991..545055 + 354 157373581 - Ssed_0440 - uroporphyrinogen decarboxylase 441 45.35 0 545598..548210 + 870 157373582 - Ssed_0441 - sensory box protein 442 48.68 0 548378..551380 - 1000 157373583 - Ssed_0442 - hypothetical protein 443 51.59 +1 551686..552978 - 430 157373584 - Ssed_0443 - phosphoribosylamine--glycine ligase 444 51.28 +1 553060..554664 - 534 157373585 - Ssed_0444 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 445 44.38 0 555335..555814 + 159 157373586 - Ssed_0445 - zinc-responsive transcriptional regulator 446 48.54 0 555817..557118 + 433 157373587 - Ssed_0446 - permease 447 48.50 0 557633..559471 + 612 157373588 - Ssed_0447 - hypothetical protein 448 47.23 0 559788..561824 + 678 157373589 - Ssed_0448 - peptidase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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