version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3540 47.99 0 4323264..4324082 - 272 157376681 - Ssed_3549 - DsbA oxidoreductase 3541 50.77 +1 4324196..4326328 - 710 157376682 - Ssed_3550 - putative suppressor for copper-sensitivity B precursor 3542 46.96 0 4326500..4326976 - 158 157376683 - Ssed_3551 - hypothetical protein 3543 55.83 +2 4327370..4328920 + 516 157376684 - Ssed_3552 - ferredoxin-dependent glutamate synthase 3544 39.67 -1 4329424..4331442 + 672 157376685 - Ssed_3553 - hypothetical protein 3545 36.10 -2 4331445..4332599 + 384 157376686 - Ssed_3554 - hypothetical protein 3546 54.50 +2 4332806..4335115 - 769 157376687 - Ssed_3555 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3547 51.32 +1 4335329..4336234 + 301 157376688 - Ssed_3556 - LysR family transcriptional regulator 3548 45.13 0 4336366..4337094 - 242 157376689 - Ssed_3557 - putative signal transduction protein 3549 52.31 +1 4337482..4338087 - 201 157376690 - Ssed_3558 - lipolytic enzyme, G-D-S-L 3550 50.95 +1 4338313..4340310 - 665 157376691 - Ssed_3559 - TonB-dependent receptor 3551 49.56 0 4340803..4341591 - 262 157376692 - Ssed_3560 - hypothetical protein 3552 49.84 0 4341816..4342766 - 316 157376693 - Ssed_3561 - polysulphide reductase, NrfD 3553 48.56 0 4342763..4343458 - 231 157376694 - Ssed_3562 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3554 47.90 0 4343473..4343973 - 166 157376695 - Ssed_3563 - hypothetical protein 3555 44.84 0 4344057..4344560 - 167 157376696 - Ssed_3564 - hypothetical protein 3556 43.53 0 4344938..4345918 + 326 157376697 - Ssed_3565 - LysR family transcriptional regulator 3557 47.05 0 4345961..4346959 - 332 157376698 - Ssed_3566 - LysR family transcriptional regulator 3558 53.66 +1 4347419..4348963 + 514 157376699 - Ssed_3567 - hypothetical protein 3559 45.75 0 4348982..4349569 + 195 157376700 - Ssed_3568 - acetyltransferase-like protein 3560 55.96 +2 4349678..4350499 + 273 157376701 - Ssed_3569 - uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 3561 36.25 -2 4350711..4351019 + 102 157376702 - Ssed_3570 - hypothetical protein 3562 45.34 0 4351012..4352844 + 610 157376703 - Ssed_3571 - diguanylate cyclase 3563 48.75 0 4352947..4353465 + 172 157376704 - Ssed_3572 - hypothetical protein 3564 54.16 +2 4353810..4356272 + 820 157376705 - Ssed_3573 - chaperone endopeptidase Clp ATP-binding chain B,ClpB 3565 51.12 +1 4356375..4356908 - 177 157376706 - Ssed_3574 - hypothetical protein 3566 52.09 +1 4357052..4358293 - 413 157376707 - Ssed_3575 - Bcr/CflA subfamily drug resistance transporter 3567 51.51 +1 4358395..4359324 + 309 157376708 - Ssed_3576 - carbonate dehydratase 3568 48.52 0 4359824..4361041 - 405 157376709 - Ssed_3577 - Na(+)-translocating NADH-quinone reductase subunit F 3569 47.95 0 4361100..4361708 - 202 157376710 - Ssed_3578 - Na(+)-translocating NADH-quinone reductase subunit E 3570 47.92 0 4361718..4362341 - 207 157376711 - Ssed_3579 - Na(+)-translocating NADH-quinone reductase subunit D 3571 48.51 0 4362343..4363113 - 256 157376712 - Ssed_3580 - Na(+)-translocating NADH-quinone reductase subunit C 3572 50.29 0 4363103..4364317 - 404 157376713 - Ssed_3581 - Na(+)-translocating NADH-quinone reductase subunit B 3573 52.06 +1 4364406..4365767 - 453 157376714 - Ssed_3582 - Na(+)-translocating NADH-quinone reductase subunit A 3574 49.39 0 4366328..4368544 + 738 157376715 - Ssed_3583 - extracellular solute-binding protein 3575 53.42 +1 4368916..4369881 - 321 157376716 - Ssed_3584 - ABC sugar transporter inner membrane translocator 3576 50.13 0 4369885..4371015 - 376 157376717 - Ssed_3585 - ABC transporter inner-membrane translocator 3577 51.13 +1 4371012..4372601 - 529 157376718 - Ssed_3586 - ABC transporter ATP-binding protein 3578 45.47 0 4372729..4373733 - 334 157376719 - Ssed_3587 - basic membrane lipoprotein 3579 46.38 0 4374670..4376907 - 745 157376720 - Ssed_3588 - decaheme cytochrome c 3580 44.41 0 4377318..4378274 + 318 157376721 - Ssed_3589 - transcriptional regulator-like protein 3581 44.79 0 4378291..4379241 + 316 157376722 - Ssed_3590 - transcriptional regulator-like protein 3582 47.81 0 4379357..4379584 - 75 157376723 - Ssed_3591 - hypothetical protein 3583 47.41 0 4379862..4380401 + 179 157376724 - Ssed_3592 - thioredoxin peroxidase 3584 50.81 +1 4380467..4381267 - 266 157376725 - Ssed_3593 - hypothetical protein 3585 45.94 0 4381451..4382275 - 274 157376726 - Ssed_3594 - amino acid ABC transporter periplasmic protein 3586 51.40 +1 4382745..4383779 + 344 157376727 - Ssed_3595 - dihydroorotase 3587 50.36 0 4383882..4385003 - 373 157376728 - Ssed_3596 - hypothetical protein 3588 48.29 0 4385228..4386658 + 476 157376729 - Ssed_3597 - glutathione synthase 3589 53.07 +1 4386752..4387060 - 102 157376730 - Ssed_3598 - ArsR family transcriptional regulator 3590 51.34 +1 4387239..4388621 + 460 157376731 - Ssed_3599 - hypothetical protein 3591 48.39 0 4388722..4389000 + 92 157376732 - Ssed_3600 - PpiC-type peptidyl-prolyl cis-trans isomerase 3592 50.41 +1 4389206..4389451 - 81 157376733 - Ssed_3601 - hypothetical protein 3593 48.97 0 4389934..4390323 + 129 157376734 - Ssed_3602 - glyoxalase/bleomycin resistance protein/dioxygenase 3594 47.25 0 4390688..4391614 + 308 157376735 - Ssed_3603 - hypothetical protein 3595 47.18 0 4391758..4393158 + 466 157376736 - Ssed_3604 - hypothetical protein 3596 43.72 0 4393268..4394143 + 291 157376737 - Ssed_3605 - hypothetical protein 3597 48.21 0 4394225..4395091 + 288 157376738 - Ssed_3606 - hypothetical protein 3598 54.19 +2 4395185..4395649 - 154 157376739 - Ssed_3607 - hypothetical protein 3599 45.45 0 4395820..4396842 - 340 157376740 - Ssed_3608 - oxidoreductase domain-containing protein 3600 44.22 0 4396846..4397148 - 100 157376741 - Ssed_3609 - hypothetical protein 3601 46.33 0 4397250..4398149 + 299 157376742 - Ssed_3610 - hypothetical protein 3602 48.90 0 4398178..4399083 - 301 157376743 - Ssed_3611 - tRNA delta(2)-isopentenylpyrophosphate transferase 3603 51.34 +1 4399291..4400001 - 236 157376744 - Ssed_3612 - purine nucleoside phosphorylase 3604 49.67 0 4400419..4401018 - 199 157376745 - Ssed_3613 - short chain dehydrogenase 3605 52.15 +1 4401142..4402023 + 293 157376746 - Ssed_3614 - LysR family transcriptional regulator 3606 48.90 0 4402088..4403038 - 316 157376747 - Ssed_3615 - LysR family transcriptional regulator 3607 49.57 0 4403196..4404008 + 270 157376748 - Ssed_3616 - enoyl-CoA hydratase/isomerase family protein 3608 47.73 0 4404054..4404935 + 293 157376749 - Ssed_3617 - oxygen-independent coproporphyrinogen III oxidase, Fe-S oxidoreductase 3609 47.38 0 4405091..4406179 - 362 157376750 - Ssed_3618 - hypothetical protein 3610 41.95 -1 4406605..4407138 + 177 157376751 - Ssed_3619 - FMN reductase, NADPH-dependent 3611 47.50 0 4407354..4408976 + 540 157376752 - Ssed_3620 - GAF containing protein 3612 51.04 +1 4408986..4410809 + 607 157376753 - Ssed_3621 - putative adenylate/guanylate cyclase 3613 50.89 +1 4410806..4411369 + 187 157376754 - Ssed_3622 - hypothetical protein 3614 50.62 +1 4411366..4412250 + 294 157376755 - Ssed_3623 - TPR repeat-containing Zn-dependent protease 3615 46.69 0 4412293..4413318 - 341 157376756 - Ssed_3624 - diguanylate cyclase 3616 43.23 0 4413591..4414166 - 191 157376757 - Ssed_3625 - hypothetical protein 3617 48.58 0 4414495..4416225 - 576 157376758 - Ssed_3626 - hypothetical protein 3618 49.50 0 4416781..4417683 + 300 157376759 - Ssed_3627 - DNA gyrase inhibitor 3619 41.46 -1 4418105..4418350 + 81 157376760 - Ssed_3628 - hypothetical protein 3620 46.49 0 4418556..4419452 + 298 157376761 - Ssed_3629 - band 7 protein 3621 45.59 0 4419580..4420134 - 184 157376762 - Ssed_3630 - OmpA domain-containing protein 3622 48.95 0 4420518..4422278 + 586 157376763 - Ssed_3631 - hypothetical protein 3623 50.94 +1 4422458..4422775 + 105 157376764 - Ssed_3632 - hypothetical protein 3624 52.32 +1 4422878..4424947 + 689 157376765 - Ssed_3633 - endothelin-converting protein 1 3625 48.95 0 4425102..4426388 - 428 157376766 - Ssed_3634 - long-chain fatty acid transport protein 3626 46.59 0 4426784..4427032 - 82 157376767 - Ssed_3635 - hypothetical protein 3627 50.87 +1 4427180..4429477 - 765 157376768 - Ssed_3636 - molybdopterin oxidoreductase 3628 53.35 +1 4429845..4431263 + 472 157376769 - Ssed_3637 - hypothetical protein 3629 48.83 0 4431615..4433834 + 739 157376770 - Ssed_3638 - TonB-dependent receptor, putative 3630 41.18 -1 4434162..4435448 - 428 157376771 - Ssed_3639 - beta-lactamase domain-containing protein 3631 42.65 -1 4435448..4436359 - 303 157376772 - Ssed_3640 - hypothetical protein 3632 38.99 -2 4436362..4437015 - 217 157376773 - Ssed_3641 - metallophosphoesterase 3633 49.44 0 4437392..4438018 + 208 157376774 - Ssed_3642 - hypothetical protein 3634 48.11 0 4438099..4438680 - 193 157376775 - Ssed_3643 - TetR family transcriptional regulator 3635 51.19 +1 4438822..4439874 + 350 157376776 - Ssed_3644 - putative NADH-dependent flavin oxidoreductase 3636 49.59 0 4440035..4441381 - 448 157376777 - Ssed_3645 - putative glutamate-1-semialdehyde-2,1-aminomutase 3637 54.22 +2 4441836..4443080 - 414 157376778 - Ssed_3646 - hypothetical protein 3638 47.92 0 4443521..4445563 + 680 157376779 - Ssed_3647 - alpha/beta fold family hydrolase 3639 50.23 0 4445692..4446123 - 143 157376780 - Ssed_3648 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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