version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3497 43.07 0 4272880..4273824 + 314 157376638 - Ssed_3506 - hypothetical protein 3498 45.40 0 4273897..4274667 - 256 157376639 - Ssed_3507 - pseudouridine synthase 3499 47.80 0 4274719..4275264 + 181 157376640 - Ssed_3508 - nodulation protein L 3500 47.34 0 4275510..4277594 + 694 157376641 - Ssed_3509 - endothelin-converting protein 1 3501 45.77 0 4277771..4278574 + 267 157376642 - Ssed_3510 - hypothetical protein 3502 49.75 0 4278811..4279212 + 133 157376643 - Ssed_3511 - hypothetical protein 3503 46.71 0 4279349..4279849 + 166 157376644 - Ssed_3512 - hypothetical protein 3504 49.84 0 4279976..4280599 - 207 157376645 - Ssed_3513 - glutathione S-transferase domain-containing protein 3505 42.40 -1 4280952..4281326 + 124 157376646 - Ssed_3514 - hypothetical protein 3506 46.01 0 4281510..4282787 + 425 157376647 - Ssed_3515 - putative manganese transporter 3507 47.85 0 4282799..4284196 + 465 157376648 - Ssed_3516 - beta-lactamase 3508 42.58 -1 4284282..4284746 + 154 157376649 - Ssed_3517 - hypothetical protein 3509 50.56 +1 4285304..4286992 + 562 157376650 - Ssed_3518 - malate dehydrogenase 3510 29.35 -2 4287626..4287901 + 91 157376651 - Ssed_3519 - hypothetical protein 3511 49.54 0 4288358..4288795 - 145 157376652 - Ssed_3520 - hypothetical protein 3512 51.81 +1 4288877..4289401 - 174 157376653 - Ssed_3521 - PAP2 family protein 3513 45.21 0 4289630..4291540 + 636 157376654 - Ssed_3522 - diguanylate cyclase 3514 45.35 0 4291541..4292347 - 268 157376655 - Ssed_3523 - extracellular solute-binding protein 3515 44.98 0 4292725..4293720 + 331 157376656 - Ssed_3524 - adenosine deaminase 3516 46.89 0 4293866..4295326 - 486 157376657 - Ssed_3525 - major facilitator transporter 3517 51.55 +1 4295811..4297007 + 398 157376658 - Ssed_3526 - putative iron-sulfur cluster binding protein 3518 48.36 0 4297067..4297279 - 70 157376659 - Ssed_3527 - hypothetical protein 3519 44.89 0 4297594..4299150 - 518 157376660 - Ssed_3528 - alpha/beta fold family hydrolase/acetyltransferase-like protein 3520 41.47 -1 4299168..4300052 - 294 157376661 - Ssed_3529 - 3-oxoadipate enol-lactonase 3521 44.90 0 4300229..4301335 + 368 157376662 - Ssed_3530 - hypothetical protein 3522 46.29 0 4301404..4302738 + 444 157376663 - Ssed_3531 - hypothetical protein 3523 42.33 -1 4303122..4304789 + 555 157376664 - Ssed_3532 - methyl-accepting chemotaxis sensory transducer 3524 50.17 0 4305052..4306263 - 403 157376665 - Ssed_3533 - acetyl-CoA acetyltransferase 3525 47.76 0 4306272..4307006 - 244 157376666 - Ssed_3534 - 3-oxoacyl-(acyl carrier protein) reductase 3526 45.29 0 4307338..4308249 + 303 157376667 - Ssed_3535 - putative transcription regulator 3527 49.69 0 4308586..4310175 + 529 157376668 - Ssed_3536 - acetate/3-ketoacid CoA transferase 3528 49.52 0 4310297..4310716 + 139 157376669 - Ssed_3537 - MaoC domain-containing protein 3529 48.38 0 4310738..4311940 + 400 157376670 - Ssed_3538 - trans-2-enoyl-CoA reductase 3530 47.37 0 4312040..4313236 + 398 157376671 - Ssed_3539 - acetate kinase 3531 48.99 0 4313346..4315484 + 712 157376672 - Ssed_3540 - phosphate acetyltransferase 3532 45.44 0 4315709..4316641 + 310 157376673 - Ssed_3541 - hypothetical protein 3533 52.96 +1 4316856..4318547 - 563 157376674 - Ssed_3542 - glucose-methanol-choline oxidoreductase 3534 48.63 0 4318588..4319319 - 243 157376675 - Ssed_3543 - hypothetical protein 3535 48.33 0 4319313..4319912 - 199 157376676 - Ssed_3544 - hypothetical protein 3536 49.96 0 4320143..4321531 + 462 157376677 - Ssed_3545 - D-amino acid dehydrogenase 3537 45.87 0 4321616..4321942 + 108 157376678 - Ssed_3546 - hypothetical protein 3538 49.71 0 4322013..4322354 + 113 157376679 - Ssed_3547 - hypothetical protein 3539 49.00 0 4322689..4323237 - 182 157376680 - Ssed_3548 - redoxin domain-containing protein 3540 47.99 0 4323264..4324082 - 272 157376681 - Ssed_3549 - DsbA oxidoreductase 3541 50.77 +1 4324196..4326328 - 710 157376682 - Ssed_3550 - putative suppressor for copper-sensitivity B precursor 3542 46.96 0 4326500..4326976 - 158 157376683 - Ssed_3551 - hypothetical protein 3543 55.83 +2 4327370..4328920 + 516 157376684 - Ssed_3552 - ferredoxin-dependent glutamate synthase 3544 39.67 -1 4329424..4331442 + 672 157376685 - Ssed_3553 - hypothetical protein 3545 36.10 -2 4331445..4332599 + 384 157376686 - Ssed_3554 - hypothetical protein 3546 54.50 +2 4332806..4335115 - 769 157376687 - Ssed_3555 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3547 51.32 +1 4335329..4336234 + 301 157376688 - Ssed_3556 - LysR family transcriptional regulator 3548 45.13 0 4336366..4337094 - 242 157376689 - Ssed_3557 - putative signal transduction protein 3549 52.31 +1 4337482..4338087 - 201 157376690 - Ssed_3558 - lipolytic enzyme, G-D-S-L 3550 50.95 +1 4338313..4340310 - 665 157376691 - Ssed_3559 - TonB-dependent receptor 3551 49.56 0 4340803..4341591 - 262 157376692 - Ssed_3560 - hypothetical protein 3552 49.84 0 4341816..4342766 - 316 157376693 - Ssed_3561 - polysulphide reductase, NrfD 3553 48.56 0 4342763..4343458 - 231 157376694 - Ssed_3562 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3554 47.90 0 4343473..4343973 - 166 157376695 - Ssed_3563 - hypothetical protein 3555 44.84 0 4344057..4344560 - 167 157376696 - Ssed_3564 - hypothetical protein 3556 43.53 0 4344938..4345918 + 326 157376697 - Ssed_3565 - LysR family transcriptional regulator 3557 47.05 0 4345961..4346959 - 332 157376698 - Ssed_3566 - LysR family transcriptional regulator 3558 53.66 +1 4347419..4348963 + 514 157376699 - Ssed_3567 - hypothetical protein 3559 45.75 0 4348982..4349569 + 195 157376700 - Ssed_3568 - acetyltransferase-like protein 3560 55.96 +2 4349678..4350499 + 273 157376701 - Ssed_3569 - uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 3561 36.25 -2 4350711..4351019 + 102 157376702 - Ssed_3570 - hypothetical protein 3562 45.34 0 4351012..4352844 + 610 157376703 - Ssed_3571 - diguanylate cyclase 3563 48.75 0 4352947..4353465 + 172 157376704 - Ssed_3572 - hypothetical protein 3564 54.16 +2 4353810..4356272 + 820 157376705 - Ssed_3573 - chaperone endopeptidase Clp ATP-binding chain B,ClpB 3565 51.12 +1 4356375..4356908 - 177 157376706 - Ssed_3574 - hypothetical protein 3566 52.09 +1 4357052..4358293 - 413 157376707 - Ssed_3575 - Bcr/CflA subfamily drug resistance transporter 3567 51.51 +1 4358395..4359324 + 309 157376708 - Ssed_3576 - carbonate dehydratase 3568 48.52 0 4359824..4361041 - 405 157376709 - Ssed_3577 - Na(+)-translocating NADH-quinone reductase subunit F 3569 47.95 0 4361100..4361708 - 202 157376710 - Ssed_3578 - Na(+)-translocating NADH-quinone reductase subunit E 3570 47.92 0 4361718..4362341 - 207 157376711 - Ssed_3579 - Na(+)-translocating NADH-quinone reductase subunit D 3571 48.51 0 4362343..4363113 - 256 157376712 - Ssed_3580 - Na(+)-translocating NADH-quinone reductase subunit C 3572 50.29 0 4363103..4364317 - 404 157376713 - Ssed_3581 - Na(+)-translocating NADH-quinone reductase subunit B 3573 52.06 +1 4364406..4365767 - 453 157376714 - Ssed_3582 - Na(+)-translocating NADH-quinone reductase subunit A 3574 49.39 0 4366328..4368544 + 738 157376715 - Ssed_3583 - extracellular solute-binding protein 3575 53.42 +1 4368916..4369881 - 321 157376716 - Ssed_3584 - ABC sugar transporter inner membrane translocator 3576 50.13 0 4369885..4371015 - 376 157376717 - Ssed_3585 - ABC transporter inner-membrane translocator 3577 51.13 +1 4371012..4372601 - 529 157376718 - Ssed_3586 - ABC transporter ATP-binding protein 3578 45.47 0 4372729..4373733 - 334 157376719 - Ssed_3587 - basic membrane lipoprotein 3579 46.38 0 4374670..4376907 - 745 157376720 - Ssed_3588 - decaheme cytochrome c 3580 44.41 0 4377318..4378274 + 318 157376721 - Ssed_3589 - transcriptional regulator-like protein 3581 44.79 0 4378291..4379241 + 316 157376722 - Ssed_3590 - transcriptional regulator-like protein 3582 47.81 0 4379357..4379584 - 75 157376723 - Ssed_3591 - hypothetical protein 3583 47.41 0 4379862..4380401 + 179 157376724 - Ssed_3592 - thioredoxin peroxidase 3584 50.81 +1 4380467..4381267 - 266 157376725 - Ssed_3593 - hypothetical protein 3585 45.94 0 4381451..4382275 - 274 157376726 - Ssed_3594 - amino acid ABC transporter periplasmic protein 3586 51.40 +1 4382745..4383779 + 344 157376727 - Ssed_3595 - dihydroorotase 3587 50.36 0 4383882..4385003 - 373 157376728 - Ssed_3596 - hypothetical protein 3588 48.29 0 4385228..4386658 + 476 157376729 - Ssed_3597 - glutathione synthase 3589 53.07 +1 4386752..4387060 - 102 157376730 - Ssed_3598 - ArsR family transcriptional regulator 3590 51.34 +1 4387239..4388621 + 460 157376731 - Ssed_3599 - hypothetical protein 3591 48.39 0 4388722..4389000 + 92 157376732 - Ssed_3600 - PpiC-type peptidyl-prolyl cis-trans isomerase 3592 50.41 +1 4389206..4389451 - 81 157376733 - Ssed_3601 - hypothetical protein 3593 48.97 0 4389934..4390323 + 129 157376734 - Ssed_3602 - glyoxalase/bleomycin resistance protein/dioxygenase 3594 47.25 0 4390688..4391614 + 308 157376735 - Ssed_3603 - hypothetical protein 3595 47.18 0 4391758..4393158 + 466 157376736 - Ssed_3604 - hypothetical protein 3596 43.72 0 4393268..4394143 + 291 157376737 - Ssed_3605 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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