version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3464 41.93 -1 4229198..4229674 + 158 157376605 - Ssed_3473 - putative metalloprotease 3465 44.63 0 4229701..4230576 + 291 157376606 - Ssed_3474 - CBS domain-containing protein 3466 48.46 0 4230617..4232176 + 519 157376607 - Ssed_3475 - apolipoprotein N-acyltransferase 3467 46.38 0 4232424..4233320 + 298 157376608 - Ssed_3476 - diguanylate cyclase 3468 46.87 0 4233476..4235344 - 622 157376609 - Ssed_3477 - putative methyl-accepting chemotaxis protein 3469 40.72 -1 4235733..4236233 - 166 157376610 - Ssed_3478 - hypothetical protein 3470 47.15 0 4236355..4238946 + 863 157376611 - Ssed_3479 - leucyl-tRNA synthetase 3471 46.87 0 4239084..4239578 + 164 157376612 - Ssed_3480 - rare lipoprotein B 3472 46.21 0 4239646..4240686 + 346 157376613 - Ssed_3481 - DNA-directed DNA polymerase 3473 45.44 0 4240888..4241523 + 211 157376614 - Ssed_3482 - adenosine deaminase 3474 38.79 -2 4241640..4241969 + 109 157376615 - Ssed_3483 - iojap-like protein 3475 48.41 0 4241969..4242439 + 156 157376616 - Ssed_3484 - SPOUT methyltransferase superfamily protein 3476 47.07 0 4242522..4244378 + 618 157376617 - Ssed_3485 - peptidoglycan glycosyltransferase 3477 47.43 0 4244375..4245481 + 368 157376618 - Ssed_3486 - rod shape-determining protein RodA 3478 44.80 0 4245673..4246692 + 339 157376619 - Ssed_3487 - lytic murein transglycosylase B 3479 46.37 0 4246679..4247476 + 265 157376620 - Ssed_3488 - rare lipoprotein A 3480 42.51 -1 4247622..4248809 + 395 157376621 - Ssed_3489 - Serine-type D-Ala-D-Ala carboxypeptidase 3481 43.07 0 4248948..4249214 + 88 157376622 - Ssed_3490 - hypothetical protein 3482 44.85 0 4249364..4250023 + 219 157376623 - Ssed_3491 - lipoate-protein ligase B 3483 46.89 0 4250016..4250981 + 321 157376624 - Ssed_3492 - lipoyl synthase 3484 44.59 0 4251040..4251501 - 153 157376625 - Ssed_3493 - ribosomal-protein-alanine acetyltransferase 3485 44.93 0 4251498..4251842 - 114 157376626 - Ssed_3494 - hypothetical protein 3486 43.08 0 4259496..4260275 - 259 157376627 - Ssed_3495 - CDP-diacylglycerol--serine O-phosphatidyltransferase 3487 43.22 0 4260413..4260847 + 144 157376628 - Ssed_3496 - hypothetical protein 3488 45.69 0 4261038..4263611 - 857 157376629 - Ssed_3497 - ATPase 3489 44.44 0 4263716..4264498 - 260 157376630 - Ssed_3498 - hypothetical protein 3490 46.91 0 4264502..4265473 - 323 157376631 - Ssed_3499 - lysozyme 3491 39.34 -1 4265509..4266357 + 282 157376632 - Ssed_3500 - putative lipoprotein 3492 43.90 0 4266840..4268420 - 526 157376633 - Ssed_3501 - diguanylate cyclase 3493 46.48 0 4268478..4270340 - 620 157376634 - Ssed_3502 - methyl-accepting chemotaxis sensory transducer 3494 45.98 0 4270622..4271578 + 318 157376635 - Ssed_3503 - ornithine cyclodeaminase 3495 45.81 0 4271814..4272350 + 178 157376636 - Ssed_3504 - ECF subfamily RNA polymerase sigma-24 factor 3496 45.51 0 4272350..4272883 + 177 157376637 - Ssed_3505 - hypothetical protein 3497 43.07 0 4272880..4273824 + 314 157376638 - Ssed_3506 - hypothetical protein 3498 45.40 0 4273897..4274667 - 256 157376639 - Ssed_3507 - pseudouridine synthase 3499 47.80 0 4274719..4275264 + 181 157376640 - Ssed_3508 - nodulation protein L 3500 47.34 0 4275510..4277594 + 694 157376641 - Ssed_3509 - endothelin-converting protein 1 3501 45.77 0 4277771..4278574 + 267 157376642 - Ssed_3510 - hypothetical protein 3502 49.75 0 4278811..4279212 + 133 157376643 - Ssed_3511 - hypothetical protein 3503 46.71 0 4279349..4279849 + 166 157376644 - Ssed_3512 - hypothetical protein 3504 49.84 0 4279976..4280599 - 207 157376645 - Ssed_3513 - glutathione S-transferase domain-containing protein 3505 42.40 -1 4280952..4281326 + 124 157376646 - Ssed_3514 - hypothetical protein 3506 46.01 0 4281510..4282787 + 425 157376647 - Ssed_3515 - putative manganese transporter 3507 47.85 0 4282799..4284196 + 465 157376648 - Ssed_3516 - beta-lactamase 3508 42.58 -1 4284282..4284746 + 154 157376649 - Ssed_3517 - hypothetical protein 3509 50.56 +1 4285304..4286992 + 562 157376650 - Ssed_3518 - malate dehydrogenase 3510 29.35 -2 4287626..4287901 + 91 157376651 - Ssed_3519 - hypothetical protein 3511 49.54 0 4288358..4288795 - 145 157376652 - Ssed_3520 - hypothetical protein 3512 51.81 +1 4288877..4289401 - 174 157376653 - Ssed_3521 - PAP2 family protein 3513 45.21 0 4289630..4291540 + 636 157376654 - Ssed_3522 - diguanylate cyclase 3514 45.35 0 4291541..4292347 - 268 157376655 - Ssed_3523 - extracellular solute-binding protein 3515 44.98 0 4292725..4293720 + 331 157376656 - Ssed_3524 - adenosine deaminase 3516 46.89 0 4293866..4295326 - 486 157376657 - Ssed_3525 - major facilitator transporter 3517 51.55 +1 4295811..4297007 + 398 157376658 - Ssed_3526 - putative iron-sulfur cluster binding protein 3518 48.36 0 4297067..4297279 - 70 157376659 - Ssed_3527 - hypothetical protein 3519 44.89 0 4297594..4299150 - 518 157376660 - Ssed_3528 - alpha/beta fold family hydrolase/acetyltransferase-like protein 3520 41.47 -1 4299168..4300052 - 294 157376661 - Ssed_3529 - 3-oxoadipate enol-lactonase 3521 44.90 0 4300229..4301335 + 368 157376662 - Ssed_3530 - hypothetical protein 3522 46.29 0 4301404..4302738 + 444 157376663 - Ssed_3531 - hypothetical protein 3523 42.33 -1 4303122..4304789 + 555 157376664 - Ssed_3532 - methyl-accepting chemotaxis sensory transducer 3524 50.17 0 4305052..4306263 - 403 157376665 - Ssed_3533 - acetyl-CoA acetyltransferase 3525 47.76 0 4306272..4307006 - 244 157376666 - Ssed_3534 - 3-oxoacyl-(acyl carrier protein) reductase 3526 45.29 0 4307338..4308249 + 303 157376667 - Ssed_3535 - putative transcription regulator 3527 49.69 0 4308586..4310175 + 529 157376668 - Ssed_3536 - acetate/3-ketoacid CoA transferase 3528 49.52 0 4310297..4310716 + 139 157376669 - Ssed_3537 - MaoC domain-containing protein 3529 48.38 0 4310738..4311940 + 400 157376670 - Ssed_3538 - trans-2-enoyl-CoA reductase 3530 47.37 0 4312040..4313236 + 398 157376671 - Ssed_3539 - acetate kinase 3531 48.99 0 4313346..4315484 + 712 157376672 - Ssed_3540 - phosphate acetyltransferase 3532 45.44 0 4315709..4316641 + 310 157376673 - Ssed_3541 - hypothetical protein 3533 52.96 +1 4316856..4318547 - 563 157376674 - Ssed_3542 - glucose-methanol-choline oxidoreductase 3534 48.63 0 4318588..4319319 - 243 157376675 - Ssed_3543 - hypothetical protein 3535 48.33 0 4319313..4319912 - 199 157376676 - Ssed_3544 - hypothetical protein 3536 49.96 0 4320143..4321531 + 462 157376677 - Ssed_3545 - D-amino acid dehydrogenase 3537 45.87 0 4321616..4321942 + 108 157376678 - Ssed_3546 - hypothetical protein 3538 49.71 0 4322013..4322354 + 113 157376679 - Ssed_3547 - hypothetical protein 3539 49.00 0 4322689..4323237 - 182 157376680 - Ssed_3548 - redoxin domain-containing protein 3540 47.99 0 4323264..4324082 - 272 157376681 - Ssed_3549 - DsbA oxidoreductase 3541 50.77 +1 4324196..4326328 - 710 157376682 - Ssed_3550 - putative suppressor for copper-sensitivity B precursor 3542 46.96 0 4326500..4326976 - 158 157376683 - Ssed_3551 - hypothetical protein 3543 55.83 +2 4327370..4328920 + 516 157376684 - Ssed_3552 - ferredoxin-dependent glutamate synthase 3544 39.67 -1 4329424..4331442 + 672 157376685 - Ssed_3553 - hypothetical protein 3545 36.10 -2 4331445..4332599 + 384 157376686 - Ssed_3554 - hypothetical protein 3546 54.50 +2 4332806..4335115 - 769 157376687 - Ssed_3555 - 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase 3547 51.32 +1 4335329..4336234 + 301 157376688 - Ssed_3556 - LysR family transcriptional regulator 3548 45.13 0 4336366..4337094 - 242 157376689 - Ssed_3557 - putative signal transduction protein 3549 52.31 +1 4337482..4338087 - 201 157376690 - Ssed_3558 - lipolytic enzyme, G-D-S-L 3550 50.95 +1 4338313..4340310 - 665 157376691 - Ssed_3559 - TonB-dependent receptor 3551 49.56 0 4340803..4341591 - 262 157376692 - Ssed_3560 - hypothetical protein 3552 49.84 0 4341816..4342766 - 316 157376693 - Ssed_3561 - polysulphide reductase, NrfD 3553 48.56 0 4342763..4343458 - 231 157376694 - Ssed_3562 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3554 47.90 0 4343473..4343973 - 166 157376695 - Ssed_3563 - hypothetical protein 3555 44.84 0 4344057..4344560 - 167 157376696 - Ssed_3564 - hypothetical protein 3556 43.53 0 4344938..4345918 + 326 157376697 - Ssed_3565 - LysR family transcriptional regulator 3557 47.05 0 4345961..4346959 - 332 157376698 - Ssed_3566 - LysR family transcriptional regulator 3558 53.66 +1 4347419..4348963 + 514 157376699 - Ssed_3567 - hypothetical protein 3559 45.75 0 4348982..4349569 + 195 157376700 - Ssed_3568 - acetyltransferase-like protein 3560 55.96 +2 4349678..4350499 + 273 157376701 - Ssed_3569 - uroporphyrin-III C/tetrapyrrole (corrin/porphyrin) methyltransferase 3561 36.25 -2 4350711..4351019 + 102 157376702 - Ssed_3570 - hypothetical protein 3562 45.34 0 4351012..4352844 + 610 157376703 - Ssed_3571 - diguanylate cyclase 3563 48.75 0 4352947..4353465 + 172 157376704 - Ssed_3572 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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