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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 299 50.43 +1 353807..355450 + 547 157373440 - Ssed_0299 - sigma-54 dependent trancsriptional regulator 300 49.54 0 355662..356309 - 215 157373441 - Ssed_0300 - hypothetical protein 301 47.37 0 356351..356578 - 75 157373442 - Ssed_0301 - hypothetical protein 302 49.16 0 356728..357624 + 298 157373443 - Ssed_0302 - ribonuclease BN 303 50.94 +1 357624..358577 + 317 157373444 - Ssed_0303 - alpha/beta hydrolase fold 304 47.37 0 358574..359143 + 189 157373445 - Ssed_0304 - hypothetical protein 305 48.40 0 359212..359649 + 145 157373446 - Ssed_0305 - D-tyrosyl-tRNA deacylase 306 51.05 +1 359652..360125 + 157 157373447 - Ssed_0306 - thioesterase domain-containing protein 307 48.65 0 360318..360911 + 197 157373448 - Ssed_0307 - azoreductase 308 52.02 +1 361077..361397 - 106 157373449 - Ssed_0308 - rhodanese domain-containing protein 309 46.85 0 361522..362268 - 248 157373450 - Ssed_0309 - hypothetical protein 310 53.12 +1 362282..363529 - 415 157373451 - Ssed_0310 - 3-oxoacyl-(acyl carrier protein) synthase II 311 50.41 +1 363567..364292 - 241 157373452 - Ssed_0311 - 3-ketoacyl-(acyl-carrier-protein) reductase 312 49.28 0 364299..364787 - 162 157373453 - Ssed_0312 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 313 50.75 +1 364784..365989 - 401 157373454 - Ssed_0313 - 3-oxoacyl-(acyl carrier protein) synthase I 314 48.97 0 366060..366692 - 210 157373455 - Ssed_0314 - hypothetical protein 315 50.04 0 366721..367983 - 420 157373456 - Ssed_0315 - tryptophan halogenase 316 48.70 0 367983..370397 - 804 157373457 - Ssed_0316 - hypothetical protein 317 49.25 0 370394..371197 - 267 157373458 - Ssed_0317 - hypothetical protein 318 47.50 0 371194..371673 - 159 157373459 - Ssed_0318 - thioesterase superfamily protein 319 51.92 +1 371673..373232 - 519 157373460 - Ssed_0319 - histidine ammonia-lyase 320 50.23 0 373233..374936 - 567 157373461 - Ssed_0320 - glycosyl transferase family protein 321 46.56 0 374936..375313 - 125 157373462 - Ssed_0321 - thioester dehydrase family protein 322 48.72 0 375306..376670 - 454 157373463 - Ssed_0322 - hypothetical protein 323 42.62 -1 376667..377215 - 182 157373464 - Ssed_0323 - hypothetical protein 324 45.78 0 377215..377463 - 82 157373465 - Ssed_0324 - acyl carrier protein 325 42.75 -1 377472..377726 - 84 157373466 - Ssed_0325 - acyl carrier protein, putative 326 48.61 0 377730..378521 - 263 157373467 - Ssed_0326 - phospholipid/glycerol acyltransferase 327 51.74 +1 378514..379230 - 238 157373468 - Ssed_0327 - hypothetical protein 328 48.74 0 379475..380344 - 289 157373469 - Ssed_0328 - hypothetical protein 329 51.88 +1 380531..382606 - 691 157373470 - Ssed_0329 - ATP-dependent DNA helicase RecG 330 49.73 0 382787..383719 - 310 157373471 - Ssed_0330 - CaCA family Na(+)/Ca(+) antiporter 331 50.78 +1 383891..385558 - 555 157373472 - Ssed_0331 - AMP-dependent synthetase and ligase 332 51.87 +1 385804..386499 - 231 157373473 - Ssed_0332 - tRNA guanosine-2'-O-methyltransferase 333 47.14 0 386567..386950 - 127 157373474 - Ssed_0333 - putative endoribonuclease L-PSP 334 50.62 +1 387040..389145 - 701 157373475 - Ssed_0334 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 335 49.12 0 389159..389443 - 94 157373476 - Ssed_0335 - DNA-directed RNA polymerase subunit omega 336 47.92 0 389500..390123 - 207 157373477 - Ssed_0336 - guanylate kinase 337 51.50 +1 390490..391557 + 355 157373478 - Ssed_0337 - hypothetical protein 338 47.78 0 391663..392631 + 322 157373479 - Ssed_0338 - hypothetical protein 339 48.65 0 392628..393704 + 358 157373480 - Ssed_0339 - aminoglycoside phosphotransferase 340 49.19 0 394139..395614 - 491 157373481 - Ssed_0340 - hypothetical protein 341 50.00 0 395907..396092 + 61 157373482 - Ssed_0341 - hypothetical protein 342 48.29 0 396516..396896 - 126 157373483 - Ssed_0342 - tetraheme cytochrome c 343 49.70 0 396941..398584 - 547 157373484 - Ssed_0343 - phenylalanine/histidine ammonia-lyase 344 55.77 +2 398611..400170 - 519 157373485 - Ssed_0344 - flavocytochrome c flavin subunit, putative 345 48.01 0 400647..401804 - 385 157373486 - Ssed_0345 - hypothetical protein 346 48.17 0 402419..403975 + 518 157373487 - Ssed_0346 - formate hydrogenlyase transcriptional activator, putative 347 47.71 0 403972..404430 - 152 157373488 - Ssed_0347 - hypothetical protein 348 49.70 0 404461..405120 - 219 157373489 - Ssed_0348 - cytoplasmic chaperone TorD family protein 349 50.16 0 405205..405840 - 211 157373490 - Ssed_0349 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 350 51.81 +1 405853..408282 - 809 157373491 - Ssed_0350 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 351 51.47 +1 408323..410329 - 668 157373492 - Ssed_0351 - outer membrane protein 352 50.00 0 410345..411298 - 317 157373493 - Ssed_0352 - cytochrome c family protein 353 50.95 +1 412077..413807 - 576 157373494 - Ssed_0353 - OPT family oligopeptide transporter 354 39.83 -1 414104..414796 + 230 157373495 - Ssed_0354 - hypothetical protein 355 45.48 0 414994..415314 - 106 157373496 - Ssed_0355 - hypothetical protein 356 44.61 0 415350..415970 - 206 157373497 - Ssed_0356 - cytoplasmic chaperone TorD family protein 357 47.79 0 416026..418128 - 700 157373498 - Ssed_0357 - hypothetical protein 358 48.54 0 418130..418747 - 205 157373499 - Ssed_0358 - anaerobic dimethyl sulfoxide reductase, subunit B 359 49.78 0 418758..421208 - 816 157373500 - Ssed_0359 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 360 49.35 0 421242..422939 - 565 157373501 - Ssed_0360 - hypothetical protein 361 49.25 0 422949..423809 - 286 157373502 - Ssed_0361 - decaheme cytochrome c MtrA 362 45.07 0 424401..425414 - 337 157373503 - Ssed_0362 - integrase, catalytic region 363 47.28 0 425452..427050 - 532 157373504 - Ssed_0363 - sodium/sulphate symporter 364 43.08 0 427389..428024 + 211 157373505 - Ssed_0364 - hypothetical protein 365 43.74 0 428039..428509 + 156 157373506 - Ssed_0365 - adenylate cyclase 366 42.31 -1 428526..429851 + 441 157373507 - Ssed_0366 - hypothetical protein 367 43.31 0 430127..431479 + 450 157373508 - Ssed_0367 - phosphate-selective porin O and P 368 41.33 -1 431489..432313 + 274 157373509 - Ssed_0368 - hypothetical protein 369 34.68 -2 432396..433064 + 222 157373510 - Ssed_0369 - hypothetical protein 370 45.69 0 433077..434120 + 347 157373511 - Ssed_0370 - phosphate transporter 371 46.03 0 435056..436882 + 608 157373512 - Ssed_0371 - hypothetical protein 372 47.17 0 437011..438036 + 341 157373513 - Ssed_0372 - putative manganese-dependent inorganic pyrophosphatase 373 48.87 0 438266..438928 + 220 157373514 - Ssed_0373 - adenylate kinase 374 41.94 -1 439043..439681 - 212 157373515 - Ssed_0374 - ERCC4 domain-containing protein 375 43.60 0 439843..441147 - 434 157373516 - Ssed_0375 - HipA domain-containing protein 376 42.97 -1 441134..441382 - 82 157373517 - Ssed_0376 - XRE family transcriptional regulator 377 48.96 0 441797..442660 - 287 157373518 - Ssed_0377 - hypothetical protein 378 49.72 0 442841..443554 + 237 157373519 - Ssed_0378 - tRNA nucleotidyltransferase 379 49.07 0 443641..444282 + 213 157373520 - Ssed_0379 - orotate phosphoribosyltransferase 380 46.36 0 444582..445241 - 219 157373521 - Ssed_0380 - GTP cyclohydrolase I 381 44.94 0 445480..447444 - 654 157373522 - Ssed_0381 - peptidase S9 prolyl oligopeptidase 382 46.30 0 447863..448456 - 197 157373523 - Ssed_0382 - nucleoid occlusion protein 383 49.02 0 448601..449059 - 152 157373524 - Ssed_0383 - deoxyuridine 5'-triphosphate nucleotidohydrolase 384 51.04 +1 449056..450258 - 400 157373525 - Ssed_0384 - phosphopantothenoylcysteine decarboxylase, phosphopantothenate--cysteine ligase 385 46.61 0 450403..451080 + 225 157373526 - Ssed_0385 - DNA repair protein RadC 386 43.04 0 451208..451444 + 78 157373527 - Ssed_0386 - ribosomal protein L28 387 36.78 -2 451451..451624 + 57 157373528 - Ssed_0387 - 50S ribosomal protein L33 388 47.05 0 451913..453232 + 439 157373529 - Ssed_0388 - N-acetylglutamate synthase 389 47.49 0 453603..454499 - 298 157373530 - Ssed_0389 - rarD protein 390 49.03 0 454745..455209 - 154 157373531 - Ssed_0390 - hypothetical protein 391 48.85 0 455509..457332 + 607 157373532 - Ssed_0391 - ATP-dependent DNA helicase RecQ 392 43.32 0 457338..459089 - 583 157373533 - Ssed_0392 - response regulator receiver protein 393 47.84 0 459605..461176 + 523 157373534 - Ssed_0393 - 2-isopropylmalate synthase 394 50.32 0 461233..462327 + 364 157373535 - Ssed_0394 - 3-isopropylmalate dehydrogenase 395 51.75 +1 462332..463732 + 466 157373536 - Ssed_0395 - isopropylmalate isomerase large subunit 396 48.35 0 463746..464351 + 201 157373537 - Ssed_0396 - isopropylmalate isomerase small subunit 397 49.03 0 464841..466178 + 445 157373538 - Ssed_0397 - long-chain fatty acid transport protein 398 45.58 0 466420..466917 + 165 157373539 - Ssed_0398 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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