version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3416 49.07 0 4175902..4176918 - 338 157376557 - Ssed_3425 - ApbE family lipoprotein 3417 45.03 0 4177064..4178311 - 415 157376558 - Ssed_3426 - Na(+)-translocating NADH-quinone reductase subunit F 3418 45.81 0 4178357..4178965 - 202 157376559 - Ssed_3427 - Na(+)-translocating NADH-quinone reductase subunit E 3419 45.18 0 4178971..4179603 - 210 157376560 - Ssed_3428 - Na(+)-translocating NADH-quinone reductase subunit D 3420 43.40 0 4179603..4180397 - 264 157376561 - Ssed_3429 - Na(+)-translocating NADH-quinone reductase subunit C 3421 48.75 0 4180390..4181589 - 399 157376562 - Ssed_3430 - Na(+)-translocating NADH-quinone reductase subunit B 3422 47.49 0 4181589..4182923 - 444 157376563 - Ssed_3431 - Na(+)-translocating NADH-quinone reductase subunit A 3423 43.14 0 4183473..4183982 - 169 157376564 - Ssed_3432 - S-ribosylhomocysteinase 3424 47.00 0 4184384..4184683 - 99 157376565 - Ssed_3433 - BolA family protein 3425 45.24 0 4184895..4185398 - 167 157376566 - Ssed_3434 - glycine cleavage system regulatory protein-like protein 3426 45.83 0 4185545..4186240 - 231 157376567 - Ssed_3435 - 2OG-Fe(II) oxygenase 3427 46.89 0 4186304..4187542 + 412 157376568 - Ssed_3436 - rRNA (guanine-N(2)-)-methyltransferase 3428 47.34 0 4187709..4188272 - 187 157376569 - Ssed_3437 - OmpA-like transmembrane domain-containing protein 3429 47.94 0 4188587..4189654 - 355 157376570 - Ssed_3438 - hypothetical protein 3430 47.09 0 4189904..4190470 + 188 157376571 - Ssed_3439 - uncharacterized lipoprotein 3431 48.38 0 4190528..4191112 + 194 157376572 - Ssed_3440 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 3432 44.65 0 4191197..4191523 + 108 157376573 - Ssed_3441 - hypothetical protein 3433 49.90 0 4191685..4193121 + 478 157376574 - Ssed_3442 - major facilitator transporter 3434 45.06 0 4193198..4193683 - 161 157376575 - Ssed_3443 - nucleotide-binding protein 3435 46.26 0 4193786..4194226 + 146 157376576 - Ssed_3444 - VanZ family protein 3436 47.27 0 4194258..4195190 + 310 157376577 - Ssed_3445 - 2-dehydropantoate 2-reductase 3437 47.04 0 4195405..4196892 + 495 157376578 - Ssed_3446 - putative sodium-dependent transporter 3438 48.40 0 4197198..4197854 + 218 157376579 - Ssed_3447 - phosphoesterase, PA-phosphatase related 3439 52.00 +1 4197921..4198793 - 290 157376580 - Ssed_3448 - hypothetical protein 3440 46.98 0 4198979..4200517 - 512 157376581 - Ssed_3449 - transporter 3441 47.35 0 4200701..4201549 - 282 157376582 - Ssed_3450 - 2-dehydro-3-deoxyphosphooctonate aldolase 3442 49.36 0 4201704..4202957 - 417 157376583 - Ssed_3451 - hypothetical protein 3443 47.53 0 4203303..4204091 - 262 157376584 - Ssed_3452 - hypothetical protein 3444 42.68 -1 4204091..4204486 - 131 157376585 - Ssed_3453 - invasion gene expression up-regulator, SirB 3445 50.80 +1 4204635..4205630 - 331 157376586 - Ssed_3454 - LysR family transcriptional regulator 3446 51.10 +1 4205676..4206131 + 151 157376587 - Ssed_3455 - GCN5-related N-acetyltransferase 3447 49.49 0 4206128..4207315 - 395 157376588 - Ssed_3456 - flagellar biosynthesis protein, putative 3448 35.45 -2 4207715..4208092 - 125 157376589 - Ssed_3457 - hypothetical protein 3449 51.13 +1 4209180..4210022 - 280 157376590 - Ssed_3458 - HemK family modification methylase 3450 46.50 0 4210078..4211163 - 361 157376591 - Ssed_3459 - peptide chain release factor 1 3451 47.23 0 4211177..4212457 - 426 157376592 - Ssed_3460 - glutamyl-tRNA reductase 3452 46.12 0 4212699..4213355 + 218 157376593 - Ssed_3461 - outer membrane lipoprotein LolB 3453 47.60 0 4213345..4214199 + 284 157376594 - Ssed_3462 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3454 46.94 0 4214278..4215225 + 315 157376595 - Ssed_3463 - ribose-phosphate pyrophosphokinase 3455 46.55 0 4215330..4215662 - 110 157376596 - Ssed_3464 - thioredoxin 3456 48.09 0 4215776..4217083 - 435 157376597 - Ssed_3465 - DNA-binding winged-HTH domain-containing protein 3457 48.30 0 4217288..4219645 - 785 157376598 - Ssed_3466 - hypothetical protein 3458 44.78 0 4222492..4223583 - 363 157376599 - Ssed_3467 - translation-associated GTPase 3459 45.47 0 4223761..4224345 - 194 157376600 - Ssed_3468 - peptidyl-tRNA hydrolase 3460 46.73 0 4224650..4225858 - 402 157376601 - Ssed_3469 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3461 41.19 -1 4226158..4226475 + 105 157376602 - Ssed_3470 - hypothetical protein 3462 46.74 0 4226571..4227995 + 474 157376603 - Ssed_3471 - 2-alkenal reductase 3463 45.11 0 4228165..4229208 + 347 157376604 - Ssed_3472 - PhoH family protein 3464 41.93 -1 4229198..4229674 + 158 157376605 - Ssed_3473 - putative metalloprotease 3465 44.63 0 4229701..4230576 + 291 157376606 - Ssed_3474 - CBS domain-containing protein 3466 48.46 0 4230617..4232176 + 519 157376607 - Ssed_3475 - apolipoprotein N-acyltransferase 3467 46.38 0 4232424..4233320 + 298 157376608 - Ssed_3476 - diguanylate cyclase 3468 46.87 0 4233476..4235344 - 622 157376609 - Ssed_3477 - putative methyl-accepting chemotaxis protein 3469 40.72 -1 4235733..4236233 - 166 157376610 - Ssed_3478 - hypothetical protein 3470 47.15 0 4236355..4238946 + 863 157376611 - Ssed_3479 - leucyl-tRNA synthetase 3471 46.87 0 4239084..4239578 + 164 157376612 - Ssed_3480 - rare lipoprotein B 3472 46.21 0 4239646..4240686 + 346 157376613 - Ssed_3481 - DNA-directed DNA polymerase 3473 45.44 0 4240888..4241523 + 211 157376614 - Ssed_3482 - adenosine deaminase 3474 38.79 -2 4241640..4241969 + 109 157376615 - Ssed_3483 - iojap-like protein 3475 48.41 0 4241969..4242439 + 156 157376616 - Ssed_3484 - SPOUT methyltransferase superfamily protein 3476 47.07 0 4242522..4244378 + 618 157376617 - Ssed_3485 - peptidoglycan glycosyltransferase 3477 47.43 0 4244375..4245481 + 368 157376618 - Ssed_3486 - rod shape-determining protein RodA 3478 44.80 0 4245673..4246692 + 339 157376619 - Ssed_3487 - lytic murein transglycosylase B 3479 46.37 0 4246679..4247476 + 265 157376620 - Ssed_3488 - rare lipoprotein A 3480 42.51 -1 4247622..4248809 + 395 157376621 - Ssed_3489 - Serine-type D-Ala-D-Ala carboxypeptidase 3481 43.07 0 4248948..4249214 + 88 157376622 - Ssed_3490 - hypothetical protein 3482 44.85 0 4249364..4250023 + 219 157376623 - Ssed_3491 - lipoate-protein ligase B 3483 46.89 0 4250016..4250981 + 321 157376624 - Ssed_3492 - lipoyl synthase 3484 44.59 0 4251040..4251501 - 153 157376625 - Ssed_3493 - ribosomal-protein-alanine acetyltransferase 3485 44.93 0 4251498..4251842 - 114 157376626 - Ssed_3494 - hypothetical protein 3486 43.08 0 4259496..4260275 - 259 157376627 - Ssed_3495 - CDP-diacylglycerol--serine O-phosphatidyltransferase 3487 43.22 0 4260413..4260847 + 144 157376628 - Ssed_3496 - hypothetical protein 3488 45.69 0 4261038..4263611 - 857 157376629 - Ssed_3497 - ATPase 3489 44.44 0 4263716..4264498 - 260 157376630 - Ssed_3498 - hypothetical protein 3490 46.91 0 4264502..4265473 - 323 157376631 - Ssed_3499 - lysozyme 3491 39.34 -1 4265509..4266357 + 282 157376632 - Ssed_3500 - putative lipoprotein 3492 43.90 0 4266840..4268420 - 526 157376633 - Ssed_3501 - diguanylate cyclase 3493 46.48 0 4268478..4270340 - 620 157376634 - Ssed_3502 - methyl-accepting chemotaxis sensory transducer 3494 45.98 0 4270622..4271578 + 318 157376635 - Ssed_3503 - ornithine cyclodeaminase 3495 45.81 0 4271814..4272350 + 178 157376636 - Ssed_3504 - ECF subfamily RNA polymerase sigma-24 factor 3496 45.51 0 4272350..4272883 + 177 157376637 - Ssed_3505 - hypothetical protein 3497 43.07 0 4272880..4273824 + 314 157376638 - Ssed_3506 - hypothetical protein 3498 45.40 0 4273897..4274667 - 256 157376639 - Ssed_3507 - pseudouridine synthase 3499 47.80 0 4274719..4275264 + 181 157376640 - Ssed_3508 - nodulation protein L 3500 47.34 0 4275510..4277594 + 694 157376641 - Ssed_3509 - endothelin-converting protein 1 3501 45.77 0 4277771..4278574 + 267 157376642 - Ssed_3510 - hypothetical protein 3502 49.75 0 4278811..4279212 + 133 157376643 - Ssed_3511 - hypothetical protein 3503 46.71 0 4279349..4279849 + 166 157376644 - Ssed_3512 - hypothetical protein 3504 49.84 0 4279976..4280599 - 207 157376645 - Ssed_3513 - glutathione S-transferase domain-containing protein 3505 42.40 -1 4280952..4281326 + 124 157376646 - Ssed_3514 - hypothetical protein 3506 46.01 0 4281510..4282787 + 425 157376647 - Ssed_3515 - putative manganese transporter 3507 47.85 0 4282799..4284196 + 465 157376648 - Ssed_3516 - beta-lactamase 3508 42.58 -1 4284282..4284746 + 154 157376649 - Ssed_3517 - hypothetical protein 3509 50.56 +1 4285304..4286992 + 562 157376650 - Ssed_3518 - malate dehydrogenase 3510 29.35 -2 4287626..4287901 + 91 157376651 - Ssed_3519 - hypothetical protein 3511 49.54 0 4288358..4288795 - 145 157376652 - Ssed_3520 - hypothetical protein 3512 51.81 +1 4288877..4289401 - 174 157376653 - Ssed_3521 - PAP2 family protein 3513 45.21 0 4289630..4291540 + 636 157376654 - Ssed_3522 - diguanylate cyclase 3514 45.35 0 4291541..4292347 - 268 157376655 - Ssed_3523 - extracellular solute-binding protein 3515 44.98 0 4292725..4293720 + 331 157376656 - Ssed_3524 - adenosine deaminase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0