version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3370 46.00 0 4116224..4117060 - 278 157376511 - Ssed_3379 - nucleoside-specific channel-forming protein, Tsx 3371 44.60 0 4117453..4118712 - 419 157376512 - Ssed_3380 - nucleoside transporter 3372 44.09 0 4118890..4119726 - 278 157376513 - Ssed_3381 - TatD-related deoxyribonuclease 3373 47.31 0 4120066..4121646 - 526 157376514 - Ssed_3382 - peptide chain release factor 3 3374 44.00 0 4121933..4122841 - 302 157376515 - Ssed_3383 - lipoprotein NlpI 3375 46.34 0 4123013..4125127 - 704 157376516 - Ssed_3384 - polynucleotide phosphorylase/polyadenylase 3376 43.71 0 4125316..4127349 + 677 157376517 - Ssed_3385 - diguanylate cyclase/phosphodiesterase 3377 42.22 -1 4127810..4128079 - 89 157376518 - Ssed_3386 - 30S ribosomal protein S15 3378 47.31 0 4128231..4129196 - 321 157376519 - Ssed_3387 - tRNA pseudouridine synthase B 3379 45.14 0 4129196..4129627 - 143 157376520 - Ssed_3388 - ribosome-binding factor A 3380 47.12 0 4129716..4132406 - 896 157376521 - Ssed_3389 - translation initiation factor IF-2 3381 46.47 0 4132433..4133932 - 499 157376522 - Ssed_3390 - transcription elongation factor NusA 3382 43.55 0 4133961..4134479 - 172 157376523 - Ssed_3391 - hypothetical protein 3383 43.97 0 4134956..4135303 - 115 157376524 - Ssed_3392 - preprotein translocase subunit SecG 3384 44.96 0 4135305..4136087 - 260 157376525 - Ssed_3393 - Triose-phosphate isomerase 3385 50.53 +1 4136297..4137628 - 443 157376526 - Ssed_3394 - phosphoglucosamine mutase 3386 49.35 0 4138066..4138908 - 280 157376527 - Ssed_3395 - dihydropteroate synthase 3387 46.92 0 4139044..4141023 - 659 157376528 - Ssed_3396 - microtubule-severing ATPase 3388 44.76 0 4141069..4141698 - 209 157376529 - Ssed_3397 - 23S rRNA methyltransferase J 3389 40.33 -1 4141790..4142089 + 99 157376530 - Ssed_3398 - hypothetical protein 3390 47.03 0 4142302..4143228 - 308 157376531 - Ssed_3399 - protein-export membrane protein SecF 3391 49.04 0 4143230..4145044 - 604 157376532 - Ssed_3400 - preprotein translocase subunit SecD 3392 44.03 0 4145194..4145754 - 186 157376533 - Ssed_3401 - hypothetical protein 3393 44.16 0 4145847..4146308 - 153 157376534 - Ssed_3402 - transcription elongation factor GreA 3394 47.97 0 4146731..4149949 - 1072 157376535 - Ssed_3403 - carbamoyl phosphate synthase large subunit 3395 44.47 0 4149970..4151127 - 385 157376536 - Ssed_3404 - carbamoyl phosphate synthase small subunit 3396 48.53 0 4151305..4152120 - 271 157376537 - Ssed_3405 - dihydrodipicolinate reductase 3397 44.82 0 4152232..4152849 - 205 157376538 - Ssed_3406 - peptidylprolyl isomerase, FKBP-type 3398 49.44 0 4152932..4153732 - 266 157376539 - Ssed_3407 - peptidase M48, Ste24p 3399 49.25 0 4154037..4155173 - 378 157376540 - Ssed_3408 - chaperone protein DnaJ 3400 46.02 0 4155301..4157223 - 640 157376541 - Ssed_3409 - 2-alkenal reductase 3401 48.81 0 4157570..4158493 + 307 157376542 - Ssed_3410 - hypothetical protein 3402 47.90 0 4158563..4159228 - 221 157376543 - Ssed_3411 - hypothetical protein 3403 45.88 0 4159768..4161840 - 690 157376544 - Ssed_3412 - peptidase S9 prolyl oligopeptidase 3404 47.30 0 4162351..4162665 + 104 157376545 - Ssed_3413 - hypothetical protein 3405 44.44 0 4162737..4163555 - 272 157376546 - Ssed_3414 - Beta-lactamase 3406 51.69 +1 4163613..4164887 - 424 157376547 - Ssed_3415 - gamma-glutamyl phosphate reductase 3407 52.64 +1 4164945..4166063 - 372 157376548 - Ssed_3416 - gamma-glutamyl kinase 3408 49.61 0 4166222..4167511 - 429 157376549 - Ssed_3417 - xanthine/uracil/vitamin C permease 3409 44.44 0 4167867..4167965 - 32 157376550 - Ssed_3418 - hypothetical protein 3410 42.42 -1 4169328..4169426 - 32 157376551 - Ssed_3419 - hypothetical protein 3411 51.82 +1 4169868..4171403 - 511 157376552 - Ssed_3420 - peptidase M17, leucyl aminopeptidase domain-containing protein 3412 47.23 0 4171733..4173193 + 486 157376553 - Ssed_3421 - Xaa-His dipeptidase 3413 48.38 0 4173238..4174320 - 360 157376554 - Ssed_3422 - DNA polymerase IV 3414 41.31 -1 4174505..4175482 - 325 157376555 - Ssed_3423 - GGDEF domain-containing protein 3415 44.14 0 4175621..4175842 - 73 157376556 - Ssed_3424 - hypothetical protein 3416 49.07 0 4175902..4176918 - 338 157376557 - Ssed_3425 - ApbE family lipoprotein 3417 45.03 0 4177064..4178311 - 415 157376558 - Ssed_3426 - Na(+)-translocating NADH-quinone reductase subunit F 3418 45.81 0 4178357..4178965 - 202 157376559 - Ssed_3427 - Na(+)-translocating NADH-quinone reductase subunit E 3419 45.18 0 4178971..4179603 - 210 157376560 - Ssed_3428 - Na(+)-translocating NADH-quinone reductase subunit D 3420 43.40 0 4179603..4180397 - 264 157376561 - Ssed_3429 - Na(+)-translocating NADH-quinone reductase subunit C 3421 48.75 0 4180390..4181589 - 399 157376562 - Ssed_3430 - Na(+)-translocating NADH-quinone reductase subunit B 3422 47.49 0 4181589..4182923 - 444 157376563 - Ssed_3431 - Na(+)-translocating NADH-quinone reductase subunit A 3423 43.14 0 4183473..4183982 - 169 157376564 - Ssed_3432 - S-ribosylhomocysteinase 3424 47.00 0 4184384..4184683 - 99 157376565 - Ssed_3433 - BolA family protein 3425 45.24 0 4184895..4185398 - 167 157376566 - Ssed_3434 - glycine cleavage system regulatory protein-like protein 3426 45.83 0 4185545..4186240 - 231 157376567 - Ssed_3435 - 2OG-Fe(II) oxygenase 3427 46.89 0 4186304..4187542 + 412 157376568 - Ssed_3436 - rRNA (guanine-N(2)-)-methyltransferase 3428 47.34 0 4187709..4188272 - 187 157376569 - Ssed_3437 - OmpA-like transmembrane domain-containing protein 3429 47.94 0 4188587..4189654 - 355 157376570 - Ssed_3438 - hypothetical protein 3430 47.09 0 4189904..4190470 + 188 157376571 - Ssed_3439 - uncharacterized lipoprotein 3431 48.38 0 4190528..4191112 + 194 157376572 - Ssed_3440 - peptidyl-prolyl cis-trans isomerase, cyclophilin type 3432 44.65 0 4191197..4191523 + 108 157376573 - Ssed_3441 - hypothetical protein 3433 49.90 0 4191685..4193121 + 478 157376574 - Ssed_3442 - major facilitator transporter 3434 45.06 0 4193198..4193683 - 161 157376575 - Ssed_3443 - nucleotide-binding protein 3435 46.26 0 4193786..4194226 + 146 157376576 - Ssed_3444 - VanZ family protein 3436 47.27 0 4194258..4195190 + 310 157376577 - Ssed_3445 - 2-dehydropantoate 2-reductase 3437 47.04 0 4195405..4196892 + 495 157376578 - Ssed_3446 - putative sodium-dependent transporter 3438 48.40 0 4197198..4197854 + 218 157376579 - Ssed_3447 - phosphoesterase, PA-phosphatase related 3439 52.00 +1 4197921..4198793 - 290 157376580 - Ssed_3448 - hypothetical protein 3440 46.98 0 4198979..4200517 - 512 157376581 - Ssed_3449 - transporter 3441 47.35 0 4200701..4201549 - 282 157376582 - Ssed_3450 - 2-dehydro-3-deoxyphosphooctonate aldolase 3442 49.36 0 4201704..4202957 - 417 157376583 - Ssed_3451 - hypothetical protein 3443 47.53 0 4203303..4204091 - 262 157376584 - Ssed_3452 - hypothetical protein 3444 42.68 -1 4204091..4204486 - 131 157376585 - Ssed_3453 - invasion gene expression up-regulator, SirB 3445 50.80 +1 4204635..4205630 - 331 157376586 - Ssed_3454 - LysR family transcriptional regulator 3446 51.10 +1 4205676..4206131 + 151 157376587 - Ssed_3455 - GCN5-related N-acetyltransferase 3447 49.49 0 4206128..4207315 - 395 157376588 - Ssed_3456 - flagellar biosynthesis protein, putative 3448 35.45 -2 4207715..4208092 - 125 157376589 - Ssed_3457 - hypothetical protein 3449 51.13 +1 4209180..4210022 - 280 157376590 - Ssed_3458 - HemK family modification methylase 3450 46.50 0 4210078..4211163 - 361 157376591 - Ssed_3459 - peptide chain release factor 1 3451 47.23 0 4211177..4212457 - 426 157376592 - Ssed_3460 - glutamyl-tRNA reductase 3452 46.12 0 4212699..4213355 + 218 157376593 - Ssed_3461 - outer membrane lipoprotein LolB 3453 47.60 0 4213345..4214199 + 284 157376594 - Ssed_3462 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase 3454 46.94 0 4214278..4215225 + 315 157376595 - Ssed_3463 - ribose-phosphate pyrophosphokinase 3455 46.55 0 4215330..4215662 - 110 157376596 - Ssed_3464 - thioredoxin 3456 48.09 0 4215776..4217083 - 435 157376597 - Ssed_3465 - DNA-binding winged-HTH domain-containing protein 3457 48.30 0 4217288..4219645 - 785 157376598 - Ssed_3466 - hypothetical protein 3458 44.78 0 4222492..4223583 - 363 157376599 - Ssed_3467 - translation-associated GTPase 3459 45.47 0 4223761..4224345 - 194 157376600 - Ssed_3468 - peptidyl-tRNA hydrolase 3460 46.73 0 4224650..4225858 - 402 157376601 - Ssed_3469 - UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 3461 41.19 -1 4226158..4226475 + 105 157376602 - Ssed_3470 - hypothetical protein 3462 46.74 0 4226571..4227995 + 474 157376603 - Ssed_3471 - 2-alkenal reductase 3463 45.11 0 4228165..4229208 + 347 157376604 - Ssed_3472 - PhoH family protein 3464 41.93 -1 4229198..4229674 + 158 157376605 - Ssed_3473 - putative metalloprotease 3465 44.63 0 4229701..4230576 + 291 157376606 - Ssed_3474 - CBS domain-containing protein 3466 48.46 0 4230617..4232176 + 519 157376607 - Ssed_3475 - apolipoprotein N-acyltransferase 3467 46.38 0 4232424..4233320 + 298 157376608 - Ssed_3476 - diguanylate cyclase 3468 46.87 0 4233476..4235344 - 622 157376609 - Ssed_3477 - putative methyl-accepting chemotaxis protein 3469 40.72 -1 4235733..4236233 - 166 157376610 - Ssed_3478 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0