version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3301 47.23 0 4025750..4027102 + 450 157376442 - Ssed_3310 - hypothetical protein 3302 45.96 0 4027213..4027980 + 255 157376443 - Ssed_3311 - exonuclease IX 3303 45.17 0 4028140..4028553 + 137 157376444 - Ssed_3312 - hypothetical protein 3304 39.02 -2 4029004..4029531 + 175 157376445 - Ssed_3313 - hypothetical protein 3305 45.83 0 4029964..4030563 - 199 157376446 - Ssed_3314 - ribosomal-protein-alanine acetyltransferase 3306 44.38 0 4030567..4031046 - 159 157376447 - Ssed_3315 - hypothetical protein 3307 49.09 0 4031095..4031754 - 219 157376448 - Ssed_3316 - multiple antibiotic resistance protein 3308 46.83 0 4031879..4034752 - 957 157376449 - Ssed_3317 - peptidase S9 prolyl oligopeptidase 3309 47.32 0 4034985..4035992 + 335 157376450 - Ssed_3318 - isocitrate dehydrogenase 3310 44.69 0 4036172..4037254 - 360 157376451 - Ssed_3319 - putative RNA 2'-O-ribose methyltransferase 3311 47.44 0 4037465..4037854 - 129 157376452 - Ssed_3320 - hypothetical protein 3312 48.15 0 4037847..4038521 - 224 157376453 - Ssed_3321 - dienelactone hydrolase 3313 45.72 0 4038502..4039413 - 303 157376454 - Ssed_3322 - DNA-binding transcriptional activator GcvA 3314 44.74 0 4039595..4039822 + 75 157376455 - Ssed_3323 - hypothetical protein 3315 42.54 -1 4040090..4041544 - 484 157376456 - Ssed_3324 - thiamine biosynthesis protein ThiI 3316 50.20 0 4041741..4042718 - 325 157376457 - Ssed_3325 - flagellar motor protein MotB 3317 48.05 0 4042723..4043490 - 255 157376458 - Ssed_3326 - flagellar motor protein PomA 3318 43.33 0 4043925..4044164 + 79 157376459 - Ssed_3327 - exodeoxyribonuclease VII, small subunit 3319 47.96 0 4044165..4045046 + 293 157376460 - Ssed_3328 - polyprenyl synthetase 3320 50.11 0 4045067..4046932 + 621 157376461 - Ssed_3329 - 1-deoxy-D-xylulose-5-phosphate synthase 3321 46.03 0 4047032..4047661 - 209 157376462 - Ssed_3330 - GrpE protein 3322 51.08 +1 4047710..4048633 + 307 157376463 - Ssed_3331 - NAD(+) kinase 3323 48.39 0 4048697..4049785 - 362 157376464 - Ssed_3332 - TonB family protein 3324 47.88 0 4049933..4051279 - 448 157376465 - Ssed_3333 - multi anti extrusion protein MatE 3325 47.54 0 4051333..4052388 - 351 157376466 - Ssed_3334 - cobalamin synthesis protein, P47K 3326 44.47 0 4052708..4054099 + 463 157376467 - Ssed_3335 - hypothetical protein 3327 50.08 0 4054188..4055477 - 429 157376468 - Ssed_3336 - DEAD/DEAH box helicase domain-containing protein 3328 45.61 0 4055530..4058592 - 1020 157376469 - Ssed_3337 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 3329 45.21 0 4058895..4059677 + 260 157376470 - Ssed_3338 - amino acid ABC transporter 3330 45.86 0 4059809..4060255 + 148 157376471 - Ssed_3339 - thioesterase superfamily protein 3331 44.84 0 4060294..4061796 - 500 157376472 - Ssed_3340 - diguanylate cyclase/phosphodiesterase 3332 48.40 0 4061866..4062708 - 280 157376473 - Ssed_3341 - putative signal transduction protein 3333 48.63 0 4063001..4064386 + 461 157376474 - Ssed_3342 - peptidase U32 3334 47.67 0 4064404..4064661 + 85 157376475 - Ssed_3343 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3335 47.54 0 4064838..4068005 - 1055 157376476 - Ssed_3344 - signal transduction protein 3336 41.11 -1 4068360..4068719 + 119 157376477 - Ssed_3345 - hypothetical protein 3337 41.63 -1 4068820..4070073 - 417 157376478 - Ssed_3346 - response regulator/GGDEF domain-containing protein 3338 45.85 0 4070227..4071936 - 569 157376479 - Ssed_3347 - acyl-CoA dehydrogenase-like protein 3339 48.44 0 4072297..4074063 - 588 157376480 - Ssed_3348 - formyl transferase-like protein 3340 49.32 0 4074147..4074659 - 170 157376481 - Ssed_3349 - hypothetical protein 3341 50.80 +1 4074834..4075835 + 333 157376482 - Ssed_3350 - peptidase U32 3342 46.34 0 4075867..4076727 + 286 157376483 - Ssed_3351 - peptidase U32 3343 42.25 -1 4076755..4077483 - 242 157376484 - Ssed_3352 - hypothetical protein 3344 45.24 0 4077966..4079351 + 461 157376485 - Ssed_3353 - nucleoside recognition domain-containing protein 3345 44.44 0 4079501..4083229 + 1242 157376486 - Ssed_3354 - PAS/PAC sensor signal transduction histidine kinase 3346 46.42 0 4083328..4083732 + 134 157376487 - Ssed_3355 - CBS domain-containing protein 3347 49.90 0 4083762..4085192 - 476 157376488 - Ssed_3356 - xanthine/uracil/vitamin C permease 3348 45.94 0 4085535..4086002 - 155 157376489 - Ssed_3357 - hypothetical protein 3349 45.03 0 4086215..4086385 + 56 157376490 - Ssed_3358 - periplasmic nitrate reductase NapE 3350 49.79 0 4086441..4087619 + 392 157376491 - Ssed_3359 - trimethylamine-N-oxide reductase C-type cytochrome TorC 3351 51.95 +1 4087725..4090217 + 830 157376492 - Ssed_3360 - trimethylamine-N-oxide reductase TorA 3352 51.08 +1 4090214..4090861 + 215 157376493 - Ssed_3361 - chaperone protein TorD 3353 45.63 0 4090978..4091229 - 83 157376494 - Ssed_3362 - hypothetical protein 3354 54.65 +2 4091601..4093223 + 540 157376495 - Ssed_3363 - hypothetical protein 3355 51.19 +1 4093411..4094670 - 419 157376496 - Ssed_3364 - DEAD/DEAH box helicase domain-containing protein 3356 51.22 +1 4094802..4097831 - 1009 157376497 - Ssed_3365 - multi-sensor hybrid histidine kinase 3357 46.81 0 4097982..4099109 + 375 157376498 - Ssed_3366 - periplasmic sensory protein associated with the TorRS two-component regulatory system 3358 48.80 0 4099332..4100042 - 236 157376499 - Ssed_3367 - DNA-binding transcriptional regulator TorR 3359 49.19 0 4100284..4100655 + 123 157376500 - Ssed_3368 - type IV pilus assembly PilZ 3360 38.27 -2 4101084..4103252 - 722 157376501 - Ssed_3369 - hypothetical protein 3361 51.38 +1 4103992..4105365 - 457 157376502 - Ssed_3370 - DNA repair protein RadA 3362 47.20 0 4105700..4108114 + 804 157376503 - Ssed_3371 - type IV pilus assembly PilZ 3363 51.43 +1 4108196..4109140 - 314 157376504 - Ssed_3372 - alpha/beta hydrolase fold 3364 51.96 +1 4109371..4110363 - 330 157376505 - Ssed_3373 - phosphoserine phosphatase 3365 47.52 0 4110441..4111187 + 248 157376506 - Ssed_3374 - membrane protein 3366 45.85 0 4111366..4112076 - 236 157376507 - Ssed_3375 - purine nucleoside phosphorylase 3367 49.26 0 4112226..4113443 - 405 157376508 - Ssed_3376 - phosphopentomutase 3368 47.90 0 4113457..4114788 - 443 157376509 - Ssed_3377 - thymidine phosphorylase 3369 49.61 0 4114973..4115746 - 257 157376510 - Ssed_3378 - deoxyribose-phosphate aldolase 3370 46.00 0 4116224..4117060 - 278 157376511 - Ssed_3379 - nucleoside-specific channel-forming protein, Tsx 3371 44.60 0 4117453..4118712 - 419 157376512 - Ssed_3380 - nucleoside transporter 3372 44.09 0 4118890..4119726 - 278 157376513 - Ssed_3381 - TatD-related deoxyribonuclease 3373 47.31 0 4120066..4121646 - 526 157376514 - Ssed_3382 - peptide chain release factor 3 3374 44.00 0 4121933..4122841 - 302 157376515 - Ssed_3383 - lipoprotein NlpI 3375 46.34 0 4123013..4125127 - 704 157376516 - Ssed_3384 - polynucleotide phosphorylase/polyadenylase 3376 43.71 0 4125316..4127349 + 677 157376517 - Ssed_3385 - diguanylate cyclase/phosphodiesterase 3377 42.22 -1 4127810..4128079 - 89 157376518 - Ssed_3386 - 30S ribosomal protein S15 3378 47.31 0 4128231..4129196 - 321 157376519 - Ssed_3387 - tRNA pseudouridine synthase B 3379 45.14 0 4129196..4129627 - 143 157376520 - Ssed_3388 - ribosome-binding factor A 3380 47.12 0 4129716..4132406 - 896 157376521 - Ssed_3389 - translation initiation factor IF-2 3381 46.47 0 4132433..4133932 - 499 157376522 - Ssed_3390 - transcription elongation factor NusA 3382 43.55 0 4133961..4134479 - 172 157376523 - Ssed_3391 - hypothetical protein 3383 43.97 0 4134956..4135303 - 115 157376524 - Ssed_3392 - preprotein translocase subunit SecG 3384 44.96 0 4135305..4136087 - 260 157376525 - Ssed_3393 - Triose-phosphate isomerase 3385 50.53 +1 4136297..4137628 - 443 157376526 - Ssed_3394 - phosphoglucosamine mutase 3386 49.35 0 4138066..4138908 - 280 157376527 - Ssed_3395 - dihydropteroate synthase 3387 46.92 0 4139044..4141023 - 659 157376528 - Ssed_3396 - microtubule-severing ATPase 3388 44.76 0 4141069..4141698 - 209 157376529 - Ssed_3397 - 23S rRNA methyltransferase J 3389 40.33 -1 4141790..4142089 + 99 157376530 - Ssed_3398 - hypothetical protein 3390 47.03 0 4142302..4143228 - 308 157376531 - Ssed_3399 - protein-export membrane protein SecF 3391 49.04 0 4143230..4145044 - 604 157376532 - Ssed_3400 - preprotein translocase subunit SecD 3392 44.03 0 4145194..4145754 - 186 157376533 - Ssed_3401 - hypothetical protein 3393 44.16 0 4145847..4146308 - 153 157376534 - Ssed_3402 - transcription elongation factor GreA 3394 47.97 0 4146731..4149949 - 1072 157376535 - Ssed_3403 - carbamoyl phosphate synthase large subunit 3395 44.47 0 4149970..4151127 - 385 157376536 - Ssed_3404 - carbamoyl phosphate synthase small subunit 3396 48.53 0 4151305..4152120 - 271 157376537 - Ssed_3405 - dihydrodipicolinate reductase 3397 44.82 0 4152232..4152849 - 205 157376538 - Ssed_3406 - peptidylprolyl isomerase, FKBP-type 3398 49.44 0 4152932..4153732 - 266 157376539 - Ssed_3407 - peptidase M48, Ste24p 3399 49.25 0 4154037..4155173 - 378 157376540 - Ssed_3408 - chaperone protein DnaJ 3400 46.02 0 4155301..4157223 - 640 157376541 - Ssed_3409 - 2-alkenal reductase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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