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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3201 41.36 -1 3889152..3889961 - 269 157376342 - Ssed_3210 - regulatory protein RecX 3202 44.31 0 3890171..3892357 - 728 157376343 - Ssed_3211 - hypothetical protein 3203 48.08 0 3892660..3894144 - 494 157376344 - Ssed_3212 - putative outer membrane protein 3204 46.89 0 3894146..3897229 - 1027 157376345 - Ssed_3213 - putative efflux protein 3205 48.64 0 3897238..3898341 - 367 157376346 - Ssed_3214 - putative efflux protein 3206 46.46 0 3898432..3899322 - 296 157376347 - Ssed_3215 - putative transcriptional regulator protein 3207 51.95 +1 3899480..3900682 - 400 157376348 - Ssed_3216 - tryptophan synthase subunit beta 3208 45.41 0 3900856..3903711 - 951 157376349 - Ssed_3217 - signal transduction protein 3209 52.45 +1 3904199..3906745 - 848 157376350 - Ssed_3218 - putative TonB-dependent receptor for Fe 3210 48.80 0 3907135..3907677 - 180 157376351 - Ssed_3219 - hypothetical protein 3211 50.28 0 3908002..3910308 - 768 157376352 - Ssed_3220 - penicillin amidase 3212 41.14 -1 3910442..3911338 - 298 157376353 - Ssed_3221 - LysR family transcriptional regulator 3213 50.26 0 3911803..3912753 - 316 157376354 - Ssed_3222 - alpha/beta hydrolase domain-containing protein 3214 53.81 +1 3913091..3913681 - 196 157376355 - Ssed_3223 - carnitine operon protein CaiE 3215 50.94 +1 3914060..3914911 - 283 157376356 - Ssed_3224 - 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase 3216 49.49 0 3915094..3915879 - 261 157376357 - Ssed_3225 - carnitinyl-CoA dehydratase 3217 42.79 -1 3915951..3917504 - 517 157376358 - Ssed_3226 - putative crotonobetaine/carnitine-CoA ligase 3218 49.47 0 3917515..3918741 - 408 157376359 - Ssed_3227 - crotonobetainyl-CoA:carnitine CoA-transferase 3219 47.14 0 3918953..3920089 - 378 157376360 - Ssed_3228 - crotonobetainyl-CoA dehydrogenase 3220 46.73 0 3920146..3921690 - 514 157376361 - Ssed_3229 - L-carnitine/gamma-butyrobetaine antiporter 3221 46.90 0 3922807..3923580 + 257 157376362 - Ssed_3230 - putative electron transfer flavoprotein FixA 3222 47.94 0 3923589..3924533 + 314 157376363 - Ssed_3231 - electron transfer flavoprotein, alpha subunit 3223 46.33 0 3924625..3925917 + 430 157376364 - Ssed_3232 - FAD dependent oxidoreductase 3224 39.93 -1 3925914..3926201 + 95 157376365 - Ssed_3233 - putative ferredoxin 3225 44.25 0 3926712..3928049 + 445 157376366 - Ssed_3234 - general substrate transporter 3226 46.30 0 3928419..3929552 + 377 157376367 - Ssed_3235 - hypothetical protein 3227 51.62 +1 3929723..3931357 + 544 157376368 - Ssed_3236 - methyl-accepting chemotaxis protein 3228 50.19 0 3931514..3931780 - 88 157376369 - Ssed_3237 - hypothetical protein 3229 48.81 0 3931968..3932219 + 83 157376370 - Ssed_3238 - hypothetical protein 3230 45.05 0 3932235..3932678 - 147 157376371 - Ssed_3239 - hypothetical protein 3231 44.99 0 3933091..3933999 - 302 157376372 - Ssed_3240 - transcriptional regulator 3232 46.67 0 3934167..3934601 + 144 157376373 - Ssed_3241 - hypothetical protein 3233 49.59 0 3934779..3937214 - 811 157376374 - Ssed_3242 - TonB-dependent receptor 3234 48.42 0 3937439..3937975 - 178 157376375 - Ssed_3243 - hypothetical protein 3235 47.11 0 3938038..3939024 - 328 157376376 - Ssed_3244 - hypothetical protein 3236 47.40 0 3939309..3939635 + 108 157376377 - Ssed_3245 - propeptide, PepSY amd peptidase M4 3237 45.83 0 3939689..3940384 + 231 157376378 - Ssed_3246 - two component transcriptional regulator 3238 49.65 0 3940377..3941786 + 469 157376379 - Ssed_3247 - sensor histidine kinase 3239 49.79 0 3941930..3943351 + 473 157376380 - Ssed_3248 - hypothetical protein 3240 45.61 0 3943486..3943998 - 170 157376381 - Ssed_3249 - hypothetical protein 3241 44.15 0 3944091..3944663 - 190 157376382 - Ssed_3250 - cyclic nucleotide-binding protein 3242 46.02 0 3944786..3946369 + 527 157376383 - Ssed_3251 - catalase 3243 47.73 0 3946790..3947164 + 124 157376384 - Ssed_3252 - AnkB protein 3244 48.50 0 3947230..3947994 - 254 157376385 - Ssed_3253 - amino acid ABC transporter periplasmic protein 3245 48.29 0 3948375..3949778 + 467 157376386 - Ssed_3254 - hypothetical protein 3246 43.80 0 3949993..3950508 + 171 157376387 - Ssed_3255 - GCN5-related N-acetyltransferase 3247 49.08 0 3950608..3952284 - 558 157376388 - Ssed_3256 - methyl-accepting chemotaxis protein 3248 46.15 0 3952313..3953209 - 298 157376389 - Ssed_3257 - hypothetical protein 3249 49.54 0 3953508..3955154 - 548 157376390 - Ssed_3258 - amidohydrolase 3 3250 48.73 0 3955327..3956937 - 536 157376391 - Ssed_3259 - hypothetical protein 3251 42.15 -1 3957500..3958384 - 294 157376392 - Ssed_3260 - AraC family transcriptional regulator 3252 43.20 0 3958393..3960501 - 702 157376393 - Ssed_3261 - GGDEF domain-containing protein 3253 45.52 0 3960467..3961828 - 453 157376394 - Ssed_3262 - hypothetical protein 3254 43.19 0 3962000..3962425 - 141 157376395 - Ssed_3263 - hypothetical protein 3255 45.66 0 3962654..3964324 + 556 157376396 - Ssed_3264 - putative sulfatase 3256 48.78 0 3964436..3965134 - 232 157376397 - Ssed_3265 - putative ribosomal small subunit pseudouridine synthase A 3257 48.58 0 3965260..3966879 - 539 157376398 - Ssed_3266 - putative uncharacterized dehydrogenase 3258 45.37 0 3967151..3967474 + 107 157376399 - Ssed_3267 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 3259 49.04 0 3967999..3968361 + 120 157376400 - Ssed_3268 - antibiotic biosynthesis monooxygenase 3260 45.70 0 3968717..3970519 + 600 157376401 - Ssed_3269 - response regulator 3261 49.72 0 3970549..3971091 - 180 157376402 - Ssed_3270 - hypothetical protein 3262 53.19 +1 3971382..3972086 + 234 157376403 - Ssed_3271 - purine nucleoside phosphorylase 3263 48.26 0 3972230..3973408 + 392 157376404 - Ssed_3272 - hypothetical protein 3264 46.44 0 3973739..3974455 - 238 157376405 - Ssed_3273 - cyclic nucleotide binding protein, putative 3265 49.65 0 3974736..3975599 + 287 157376406 - Ssed_3274 - putative lipoprotein 3266 51.98 +1 3975777..3976559 - 260 157376407 - Ssed_3275 - AraC/XylS family transcriptional regulator 3267 52.16 +1 3976661..3977818 + 385 157376408 - Ssed_3276 - multidrug resistance protein D 3268 48.08 0 3977917..3978960 - 347 157376409 - Ssed_3277 - hypothetical protein 3269 48.73 0 3979642..3980466 - 274 157376410 - Ssed_3278 - hypothetical protein 3270 49.21 0 3980623..3981882 - 419 157376411 - Ssed_3279 - putative lipoprotein 3271 48.62 0 3982093..3982779 + 228 157376412 - Ssed_3280 - DNA-binding response regulator 3272 48.14 0 3982772..3984223 + 483 157376413 - Ssed_3281 - sensor histidine kinase 3273 49.02 0 3984220..3984678 - 152 157376414 - Ssed_3282 - hypothetical protein 3274 54.03 +1 3984893..3986182 + 429 157376415 - Ssed_3283 - O-acetylhomoserine aminocarboxypropyltransferase 3275 46.96 0 3986440..3988377 + 645 157376416 - Ssed_3284 - diguanylate cyclase/phosphodiesterase with GAF sensor 3276 48.44 0 3988497..3989231 - 244 157376417 - Ssed_3285 - hypothetical protein 3277 47.65 0 3989985..3992129 + 714 157376418 - Ssed_3286 - hypothetical protein 3278 51.76 +1 3992348..3993964 + 538 157376419 - Ssed_3287 - peptidase S41 3279 50.39 +1 3993988..3994368 + 126 157376420 - Ssed_3288 - hypothetical protein 3280 51.97 +1 3994612..3997599 + 995 157376421 - Ssed_3289 - PKD repeat-containing protein 3281 49.92 0 3997753..3999579 - 608 157376422 - Ssed_3290 - peptidase S8 and S53, subtilisin, kexin, sedolisin 3282 50.15 0 3999883..4000554 + 223 157376423 - Ssed_3291 - hypothetical protein 3283 51.72 +1 4000612..4001280 + 222 157376424 - Ssed_3292 - putative glutathione S-transferase 3284 40.91 -1 4001551..4002342 + 263 157376425 - Ssed_3293 - amino acid ABC transporter periplasmic protein 3285 44.35 0 4002374..4003045 - 223 157376426 - Ssed_3294 - 6-O-methylguanine DNA methyltransferase 3286 51.16 +1 4003559..4004938 + 459 157376427 - Ssed_3295 - Fmu (Sun) domain-containing protein 3287 45.54 0 4005437..4006960 - 507 157376428 - Ssed_3296 - diguanylate cyclase 3288 44.07 0 4007391..4007930 - 179 157376429 - Ssed_3297 - YfaZ family protein 3289 41.15 -1 4008210..4008695 + 161 157376430 - Ssed_3298 - glutathione peroxidase 3290 48.38 0 4009301..4011094 - 597 157376431 - Ssed_3299 - peptidase M1, membrane alanine aminopeptidase 3291 47.23 0 4011249..4012133 + 294 157376432 - Ssed_3300 - collagenase 3292 47.12 0 4013851..4014822 - 323 157376433 - Ssed_3301 - phosphate binding protein 3293 49.39 0 4015060..4016379 - 439 157376434 - Ssed_3302 - putative PAS/PAC sensor protein 3294 50.43 +1 4016475..4017164 - 229 157376435 - Ssed_3303 - two component transcriptional regulator 3295 46.77 0 4017411..4018355 - 314 157376436 - Ssed_3304 - porin 3296 39.13 -2 4018390..4018665 + 91 157376437 - Ssed_3305 - hypothetical protein 3297 46.05 0 4018647..4019558 + 303 157376438 - Ssed_3306 - recombination associated protein 3298 48.25 0 4019643..4021439 - 598 157376439 - Ssed_3307 - peptidase M61 domain-containing protein 3299 43.44 0 4021615..4023771 + 718 157376440 - Ssed_3308 - TPR repeat-containing protein 3300 43.11 0 4024096..4025640 + 514 157376441 - Ssed_3309 - diguanylate cyclase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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