version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3147 44.99 0 3813607..3814464 - 285 157376288 - Ssed_3156 - phosphatidate cytidylyltransferase 3148 46.67 0 3814483..3815277 - 264 157376289 - Ssed_3157 - di-trans, poly-cis-decaprenylcistransferase 3149 41.94 -1 3815358..3815915 - 185 157376290 - Ssed_3158 - ribosome recycling factor 3150 44.17 0 3815990..3816727 - 245 157376291 - Ssed_3159 - uridylate kinase 3151 45.58 0 3816817..3817665 - 282 157376292 - Ssed_3160 - elongation factor Ts 3152 45.27 0 3817800..3818528 - 242 157376293 - Ssed_3161 - 30S ribosomal protein S2 3153 43.61 0 3818881..3819678 + 265 157376294 - Ssed_3162 - methionine aminopeptidase 3154 47.60 0 3819755..3822334 + 859 157376295 - Ssed_3163 - PII uridylyl-transferase 3155 47.03 0 3822527..3823351 + 274 157376296 - Ssed_3164 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 3156 38.84 -2 3823604..3823948 + 114 157376297 - Ssed_3165 - hypothetical protein 3157 39.81 -1 3824143..3824976 - 277 157376298 - Ssed_3166 - formyltetrahydrofolate deformylase 3158 44.83 0 3825018..3826487 - 489 157376299 - Ssed_3167 - PTS system, glucose-like IIB subunint 3159 43.23 0 3826439..3826903 - 154 157376300 - Ssed_3168 - flavodoxin 3160 45.64 0 3827342..3828178 - 278 157376301 - Ssed_3169 - pseudouridylate synthase 3161 39.25 -2 3828180..3828500 - 106 157376302 - Ssed_3170 - hypothetical protein 3162 43.69 0 3828741..3829754 + 337 157376303 - Ssed_3171 - hypothetical protein 3163 47.44 0 3829751..3830140 + 129 157376304 - Ssed_3172 - hypothetical protein 3164 44.29 0 3831663..3832310 - 215 157376305 - Ssed_3173 - GCN5-related N-acetyltransferase 3165 41.13 -1 3832792..3833022 + 76 157376306 - Ssed_3174 - hypothetical protein 3166 45.10 0 3833030..3833386 - 118 157376307 - Ssed_3175 - hypothetical protein 3167 41.14 -1 3833549..3833881 + 110 157376308 - Ssed_3176 - hypothetical protein 3168 45.61 0 3833881..3834654 + 257 157376309 - Ssed_3177 - hypothetical protein 3169 45.11 0 3834700..3835353 - 217 157376310 - Ssed_3178 - SecY interacting protein Syd 3170 44.79 0 3835399..3836271 + 290 157376311 - Ssed_3179 - 7-cyano-7-deazaguanine reductase 3171 40.90 -1 3836525..3837304 - 259 157376312 - Ssed_3180 - hypothetical protein 3172 42.94 -1 3837413..3838099 - 228 157376313 - Ssed_3181 - hypothetical protein 3173 41.75 -1 3838297..3839199 - 300 157376314 - Ssed_3182 - LysR family transcriptional regulator 3174 42.68 -1 3839296..3840204 - 302 157376315 - Ssed_3183 - LysR family transcriptional regulator 3175 49.13 0 3840370..3842370 + 666 157376316 - Ssed_3184 - metallo-beta-lactamase superfamily protein 3176 44.50 0 3842878..3844068 + 396 157376317 - Ssed_3185 - hypothetical protein 3177 44.94 0 3844311..3845249 - 312 157376318 - Ssed_3186 - 4'-phosphopantetheinyl transferase 3178 44.86 0 3845495..3847420 + 641 157376319 - Ssed_3187 - methyl-accepting chemotaxis protein-like protein 3179 46.49 0 3847575..3848828 + 417 157376320 - Ssed_3188 - HD domain-containing protein 3180 45.69 0 3849052..3849642 + 196 157376321 - Ssed_3189 - sigma-24 (FecI-like) 3181 47.72 0 3849791..3850798 + 335 157376322 - Ssed_3190 - permease 3182 45.15 0 3850803..3851039 + 78 157376323 - Ssed_3191 - thiol-disulfide isomerase/thioredoxin 3183 49.38 0 3851229..3851708 + 159 157376324 - Ssed_3192 - hypothetical protein 3184 47.55 0 3851960..3852163 + 67 157376325 - Ssed_3193 - hypothetical protein 3185 49.07 0 3852294..3853589 - 431 157376326 - Ssed_3194 - hypothetical protein 3186 49.56 0 3853586..3854269 - 227 157376327 - Ssed_3195 - putative ABC transporter, ATP-binding protein 3187 49.15 0 3854404..3855636 - 410 157376328 - Ssed_3196 - hypothetical protein 3188 49.61 0 3855626..3856909 - 427 157376329 - Ssed_3197 - hypothetical protein 3189 44.92 0 3856966..3857733 - 255 157376330 - Ssed_3198 - hypothetical protein 3190 51.52 +1 3858577..3861495 + 972 157376331 - Ssed_3199 - hypothetical protein 3191 49.83 0 3862123..3864171 - 682 157376332 - Ssed_3200 - elongation factor G 3192 49.25 0 3864571..3865437 + 288 157376333 - Ssed_3201 - transcriptional regulator, putative 3193 49.25 0 3865437..3873731 + 2764 157376334 - Ssed_3202 - erythronolide synthase 3194 47.74 0 3873731..3876028 + 765 157376335 - Ssed_3203 - omega-3 polyunsaturated fatty acid synthase PfaB 3195 49.52 0 3876028..3881841 + 1937 157376336 - Ssed_3204 - omega-3 polyunsaturated fatty acid synthase PfaC 3196 52.77 +1 3882033..3883658 + 541 157376337 - Ssed_3205 - 2-nitropropane dioxygenase, NPD 3197 36.81 -2 3883982..3885247 - 421 157376338 - Ssed_3206 - putative esterase 3198 44.07 0 3885693..3887117 + 474 157376339 - Ssed_3207 - divalent anion:sodium symporter family protein 3199 46.31 0 3887296..3888651 + 451 157376340 - Ssed_3208 - sensory transduction protein kinase 3200 43.25 0 3888638..3889111 + 157 157376341 - Ssed_3209 - putative chemotaxis protein CheY 3201 41.36 -1 3889152..3889961 - 269 157376342 - Ssed_3210 - regulatory protein RecX 3202 44.31 0 3890171..3892357 - 728 157376343 - Ssed_3211 - hypothetical protein 3203 48.08 0 3892660..3894144 - 494 157376344 - Ssed_3212 - putative outer membrane protein 3204 46.89 0 3894146..3897229 - 1027 157376345 - Ssed_3213 - putative efflux protein 3205 48.64 0 3897238..3898341 - 367 157376346 - Ssed_3214 - putative efflux protein 3206 46.46 0 3898432..3899322 - 296 157376347 - Ssed_3215 - putative transcriptional regulator protein 3207 51.95 +1 3899480..3900682 - 400 157376348 - Ssed_3216 - tryptophan synthase subunit beta 3208 45.41 0 3900856..3903711 - 951 157376349 - Ssed_3217 - signal transduction protein 3209 52.45 +1 3904199..3906745 - 848 157376350 - Ssed_3218 - putative TonB-dependent receptor for Fe 3210 48.80 0 3907135..3907677 - 180 157376351 - Ssed_3219 - hypothetical protein 3211 50.28 0 3908002..3910308 - 768 157376352 - Ssed_3220 - penicillin amidase 3212 41.14 -1 3910442..3911338 - 298 157376353 - Ssed_3221 - LysR family transcriptional regulator 3213 50.26 0 3911803..3912753 - 316 157376354 - Ssed_3222 - alpha/beta hydrolase domain-containing protein 3214 53.81 +1 3913091..3913681 - 196 157376355 - Ssed_3223 - carnitine operon protein CaiE 3215 50.94 +1 3914060..3914911 - 283 157376356 - Ssed_3224 - 3-alpha,7-alpha,12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoAhydratase 3216 49.49 0 3915094..3915879 - 261 157376357 - Ssed_3225 - carnitinyl-CoA dehydratase 3217 42.79 -1 3915951..3917504 - 517 157376358 - Ssed_3226 - putative crotonobetaine/carnitine-CoA ligase 3218 49.47 0 3917515..3918741 - 408 157376359 - Ssed_3227 - crotonobetainyl-CoA:carnitine CoA-transferase 3219 47.14 0 3918953..3920089 - 378 157376360 - Ssed_3228 - crotonobetainyl-CoA dehydrogenase 3220 46.73 0 3920146..3921690 - 514 157376361 - Ssed_3229 - L-carnitine/gamma-butyrobetaine antiporter 3221 46.90 0 3922807..3923580 + 257 157376362 - Ssed_3230 - putative electron transfer flavoprotein FixA 3222 47.94 0 3923589..3924533 + 314 157376363 - Ssed_3231 - electron transfer flavoprotein, alpha subunit 3223 46.33 0 3924625..3925917 + 430 157376364 - Ssed_3232 - FAD dependent oxidoreductase 3224 39.93 -1 3925914..3926201 + 95 157376365 - Ssed_3233 - putative ferredoxin 3225 44.25 0 3926712..3928049 + 445 157376366 - Ssed_3234 - general substrate transporter 3226 46.30 0 3928419..3929552 + 377 157376367 - Ssed_3235 - hypothetical protein 3227 51.62 +1 3929723..3931357 + 544 157376368 - Ssed_3236 - methyl-accepting chemotaxis protein 3228 50.19 0 3931514..3931780 - 88 157376369 - Ssed_3237 - hypothetical protein 3229 48.81 0 3931968..3932219 + 83 157376370 - Ssed_3238 - hypothetical protein 3230 45.05 0 3932235..3932678 - 147 157376371 - Ssed_3239 - hypothetical protein 3231 44.99 0 3933091..3933999 - 302 157376372 - Ssed_3240 - transcriptional regulator 3232 46.67 0 3934167..3934601 + 144 157376373 - Ssed_3241 - hypothetical protein 3233 49.59 0 3934779..3937214 - 811 157376374 - Ssed_3242 - TonB-dependent receptor 3234 48.42 0 3937439..3937975 - 178 157376375 - Ssed_3243 - hypothetical protein 3235 47.11 0 3938038..3939024 - 328 157376376 - Ssed_3244 - hypothetical protein 3236 47.40 0 3939309..3939635 + 108 157376377 - Ssed_3245 - propeptide, PepSY amd peptidase M4 3237 45.83 0 3939689..3940384 + 231 157376378 - Ssed_3246 - two component transcriptional regulator 3238 49.65 0 3940377..3941786 + 469 157376379 - Ssed_3247 - sensor histidine kinase 3239 49.79 0 3941930..3943351 + 473 157376380 - Ssed_3248 - hypothetical protein 3240 45.61 0 3943486..3943998 - 170 157376381 - Ssed_3249 - hypothetical protein 3241 44.15 0 3944091..3944663 - 190 157376382 - Ssed_3250 - cyclic nucleotide-binding protein 3242 46.02 0 3944786..3946369 + 527 157376383 - Ssed_3251 - catalase 3243 47.73 0 3946790..3947164 + 124 157376384 - Ssed_3252 - AnkB protein 3244 48.50 0 3947230..3947994 - 254 157376385 - Ssed_3253 - amino acid ABC transporter periplasmic protein 3245 48.29 0 3948375..3949778 + 467 157376386 - Ssed_3254 - hypothetical protein 3246 43.80 0 3949993..3950508 + 171 157376387 - Ssed_3255 - GCN5-related N-acetyltransferase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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