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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 3091 46.46 0 3738062..3739135 + 357 157376232 - Ssed_3100 - N-acylneuraminate-9-phosphate synthase 3092 44.93 0 3739146..3739766 + 206 157376233 - Ssed_3101 - sialic acid biosynthesis protein NeuD 3093 42.97 -1 3739768..3740826 + 352 157376234 - Ssed_3102 - mannose-1-phosphate guanyltransferase 3094 42.30 -1 3740823..3741803 + 326 157376235 - Ssed_3103 - dehydrogenase 3095 42.17 -1 3741800..3742501 + 233 157376236 - Ssed_3104 - N-acylneuraminate cytidylyltransferase 3096 41.63 -1 3742495..3743253 + 252 157376237 - Ssed_3105 - flagellin modification protein A 3097 43.66 0 3743257..3743808 + 183 157376238 - Ssed_3106 - acetyltransferase 3098 37.93 -2 3743957..3746482 + 841 157376239 - Ssed_3107 - hypothetical protein 3099 45.21 0 3746590..3747069 + 159 157376240 - Ssed_3108 - hypothetical protein 3100 48.26 0 3747287..3747862 + 191 157376241 - Ssed_3109 - hypothetical protein 3101 46.32 0 3747999..3748922 - 307 157376242 - Ssed_3110 - hypothetical protein 3102 46.13 0 3749078..3749710 - 210 157376243 - Ssed_3111 - TetR family transcriptional regulator 3103 48.09 0 3749856..3750980 + 374 157376244 - Ssed_3112 - RND family efflux transporter MFP subunit 3104 50.99 +1 3750984..3754076 + 1030 157376245 - Ssed_3113 - acriflavin resistance protein 3105 49.25 0 3754341..3756344 + 667 157376246 - Ssed_3114 - methyl-accepting chemotaxis sensory transducer 3106 53.33 +1 3756811..3756960 + 49 157376247 - Ssed_3115 - TfoX family regulatory protein 3107 36.75 -2 3757120..3757236 - 38 157376248 - Ssed_3116 - cyd operon protein YbgT 3108 46.05 0 3757252..3758391 - 379 157376249 - Ssed_3117 - alkaline phosphatase 3109 45.34 0 3758407..3759963 - 518 157376250 - Ssed_3118 - cytochrome bd ubiquinol oxidase, subunit I 3110 49.54 0 3761210..3765091 - 1293 157376251 - Ssed_3119 - phosphoribosylformylglycinamidine synthase 3111 47.68 0 3765424..3766866 + 480 157376252 - Ssed_3120 - lytic transglycosylase, catalytic 3112 53.75 +1 3767283..3767816 - 177 157376253 - Ssed_3121 - cytidine/deoxycytidylate deaminase family protein 3113 44.52 0 3767927..3768856 + 309 157376254 - Ssed_3122 - GGDEF domain-containing protein 3114 48.23 0 3768930..3770507 - 525 157376255 - Ssed_3123 - bifunctional GMP synthase/glutamine amidotransferase protein 3115 47.93 0 3770634..3772106 - 490 157376256 - Ssed_3124 - inositol-5-monophosphate dehydrogenase 3116 51.99 +1 3772228..3773556 + 442 157376257 - Ssed_3125 - exodeoxyribonuclease VII large subunit 3117 43.14 0 3773632..3773988 - 118 157376258 - Ssed_3126 - DsrE family protein 3118 47.92 0 3774013..3774588 - 191 157376259 - Ssed_3127 - methyltransferase type 11 3119 46.88 0 3774674..3775345 + 223 157376260 - Ssed_3128 - ArsR family transcriptional regulator 3120 45.05 0 3775631..3776236 - 201 157376261 - Ssed_3129 - methyltransferase type 11 3121 50.26 0 3777387..3779141 + 584 157376262 - Ssed_3130 - prolyl-tRNA synthetase 3122 53.58 +1 3779253..3780482 - 409 157376263 - Ssed_3131 - putative phenylacetate-coenzyme A ligase 3123 47.13 0 3780533..3781351 - 272 157376264 - Ssed_3132 - ABC transporter-related protein 3124 51.68 +1 3781401..3782648 - 415 157376265 - Ssed_3133 - putative branched-chain amino acid ABC transporter 3125 51.49 +1 3782879..3783952 - 357 157376266 - Ssed_3134 - inner-membrane translocator 3126 50.34 0 3784040..3784933 - 297 157376267 - Ssed_3135 - inner-membrane translocator 3127 51.04 +1 3784930..3786894 - 654 157376268 - Ssed_3136 - AMP-dependent synthetase and ligase 3128 50.13 0 3786894..3787691 - 265 157376269 - Ssed_3137 - ABC transporter-related protein 3129 50.34 0 3787888..3788928 - 346 157376270 - Ssed_3138 - hypothetical protein 3130 50.17 0 3789169..3792654 + 1161 157376271 - Ssed_3139 - integral membrane sensor hybrid histidine kinase 3131 46.61 0 3792615..3793277 - 220 157376272 - Ssed_3140 - two component LuxR family transcriptional regulator 3132 48.40 0 3793709..3794836 + 375 157376273 - Ssed_3141 - patatin 3133 54.76 +2 3794923..3795636 - 237 157376274 - Ssed_3142 - hypothetical protein 3134 51.64 +1 3795647..3797596 - 649 157376275 - Ssed_3143 - potassium efflux system protein 3135 46.37 0 3797781..3798662 + 293 157376276 - Ssed_3144 - diguanylate cyclase 3136 50.24 0 3798643..3800127 - 494 157376277 - Ssed_3145 - tRNA(Ile)-lysidine synthetase 3137 50.60 +1 3800129..3803602 - 1157 157376278 - Ssed_3146 - DNA polymerase III subunit alpha 3138 46.88 0 3803736..3804377 - 213 157376279 - Ssed_3147 - ribonuclease H 3139 48.38 0 3804411..3805553 - 380 157376280 - Ssed_3148 - lipid-A-disaccharide synthase 3140 45.70 0 3805634..3806401 - 255 157376281 - Ssed_3149 - UDP-N-acetylglucosamine acyltransferase 3141 44.59 0 3806398..3806859 - 153 157376282 - Ssed_3150 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 3142 47.56 0 3806889..3807914 - 341 157376283 - Ssed_3151 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 3143 46.46 0 3807934..3808428 - 164 157376284 - Ssed_3152 - outer membrane chaperone Skp (OmpH) 3144 45.77 0 3808498..3810981 - 827 157376285 - Ssed_3153 - surface antigen (D15) 3145 46.25 0 3811011..3812396 - 461 157376286 - Ssed_3154 - putative membrane-associated zinc metalloprotease 3146 45.54 0 3812416..3813603 - 395 157376287 - Ssed_3155 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3147 44.99 0 3813607..3814464 - 285 157376288 - Ssed_3156 - phosphatidate cytidylyltransferase 3148 46.67 0 3814483..3815277 - 264 157376289 - Ssed_3157 - di-trans, poly-cis-decaprenylcistransferase 3149 41.94 -1 3815358..3815915 - 185 157376290 - Ssed_3158 - ribosome recycling factor 3150 44.17 0 3815990..3816727 - 245 157376291 - Ssed_3159 - uridylate kinase 3151 45.58 0 3816817..3817665 - 282 157376292 - Ssed_3160 - elongation factor Ts 3152 45.27 0 3817800..3818528 - 242 157376293 - Ssed_3161 - 30S ribosomal protein S2 3153 43.61 0 3818881..3819678 + 265 157376294 - Ssed_3162 - methionine aminopeptidase 3154 47.60 0 3819755..3822334 + 859 157376295 - Ssed_3163 - PII uridylyl-transferase 3155 47.03 0 3822527..3823351 + 274 157376296 - Ssed_3164 - 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase 3156 38.84 -2 3823604..3823948 + 114 157376297 - Ssed_3165 - hypothetical protein 3157 39.81 -1 3824143..3824976 - 277 157376298 - Ssed_3166 - formyltetrahydrofolate deformylase 3158 44.83 0 3825018..3826487 - 489 157376299 - Ssed_3167 - PTS system, glucose-like IIB subunint 3159 43.23 0 3826439..3826903 - 154 157376300 - Ssed_3168 - flavodoxin 3160 45.64 0 3827342..3828178 - 278 157376301 - Ssed_3169 - pseudouridylate synthase 3161 39.25 -2 3828180..3828500 - 106 157376302 - Ssed_3170 - hypothetical protein 3162 43.69 0 3828741..3829754 + 337 157376303 - Ssed_3171 - hypothetical protein 3163 47.44 0 3829751..3830140 + 129 157376304 - Ssed_3172 - hypothetical protein 3164 44.29 0 3831663..3832310 - 215 157376305 - Ssed_3173 - GCN5-related N-acetyltransferase 3165 41.13 -1 3832792..3833022 + 76 157376306 - Ssed_3174 - hypothetical protein 3166 45.10 0 3833030..3833386 - 118 157376307 - Ssed_3175 - hypothetical protein 3167 41.14 -1 3833549..3833881 + 110 157376308 - Ssed_3176 - hypothetical protein 3168 45.61 0 3833881..3834654 + 257 157376309 - Ssed_3177 - hypothetical protein 3169 45.11 0 3834700..3835353 - 217 157376310 - Ssed_3178 - SecY interacting protein Syd 3170 44.79 0 3835399..3836271 + 290 157376311 - Ssed_3179 - 7-cyano-7-deazaguanine reductase 3171 40.90 -1 3836525..3837304 - 259 157376312 - Ssed_3180 - hypothetical protein 3172 42.94 -1 3837413..3838099 - 228 157376313 - Ssed_3181 - hypothetical protein 3173 41.75 -1 3838297..3839199 - 300 157376314 - Ssed_3182 - LysR family transcriptional regulator 3174 42.68 -1 3839296..3840204 - 302 157376315 - Ssed_3183 - LysR family transcriptional regulator 3175 49.13 0 3840370..3842370 + 666 157376316 - Ssed_3184 - metallo-beta-lactamase superfamily protein 3176 44.50 0 3842878..3844068 + 396 157376317 - Ssed_3185 - hypothetical protein 3177 44.94 0 3844311..3845249 - 312 157376318 - Ssed_3186 - 4'-phosphopantetheinyl transferase 3178 44.86 0 3845495..3847420 + 641 157376319 - Ssed_3187 - methyl-accepting chemotaxis protein-like protein 3179 46.49 0 3847575..3848828 + 417 157376320 - Ssed_3188 - HD domain-containing protein 3180 45.69 0 3849052..3849642 + 196 157376321 - Ssed_3189 - sigma-24 (FecI-like) 3181 47.72 0 3849791..3850798 + 335 157376322 - Ssed_3190 - permease 3182 45.15 0 3850803..3851039 + 78 157376323 - Ssed_3191 - thiol-disulfide isomerase/thioredoxin 3183 49.38 0 3851229..3851708 + 159 157376324 - Ssed_3192 - hypothetical protein 3184 47.55 0 3851960..3852163 + 67 157376325 - Ssed_3193 - hypothetical protein 3185 49.07 0 3852294..3853589 - 431 157376326 - Ssed_3194 - hypothetical protein 3186 49.56 0 3853586..3854269 - 227 157376327 - Ssed_3195 - putative ABC transporter, ATP-binding protein 3187 49.15 0 3854404..3855636 - 410 157376328 - Ssed_3196 - hypothetical protein 3188 49.61 0 3855626..3856909 - 427 157376329 - Ssed_3197 - hypothetical protein 3189 44.92 0 3856966..3857733 - 255 157376330 - Ssed_3198 - hypothetical protein 3190 51.52 +1 3858577..3861495 + 972 157376331 - Ssed_3199 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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