version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 251 48.04 0 284323..285573 + 416 157373392 - Ssed_0251 - hypothetical protein 252 48.78 0 285705..286073 - 122 157373393 - Ssed_0252 - hypothetical protein 253 48.18 0 286268..287230 - 320 157373394 - Ssed_0253 - LysR family transcriptional regulator 254 51.04 +1 287338..288540 + 400 157373395 - Ssed_0254 - Bcr/CflA subfamily drug resistance transporter 255 44.89 0 288663..289553 - 296 157373396 - Ssed_0255 - hypothetical protein 256 46.80 0 289774..290367 + 197 157373397 - Ssed_0256 - DTW domain-containing protein 257 48.15 0 290669..292780 - 703 157373398 - Ssed_0257 - diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) 258 50.31 0 293104..293421 + 105 157373399 - Ssed_0258 - hypothetical protein 259 47.48 0 293459..294094 + 211 157373400 - Ssed_0259 - methyltransferase type 12 260 44.68 0 294163..294876 - 237 157373401 - Ssed_0260 - hypothetical protein 261 46.55 0 295106..296437 + 443 157373402 - Ssed_0261 - peptidase M16 domain-containing protein 262 47.05 0 296434..297876 + 480 157373403 - Ssed_0262 - peptidase M16 domain-containing protein 263 43.39 0 298019..298585 + 188 157373404 - Ssed_0263 - hypothetical protein 264 46.18 0 298542..299078 + 178 157373405 - Ssed_0264 - hypothetical protein 265 51.61 +1 299126..299590 - 154 157373406 - Ssed_0265 - RNA methyltransferase 266 47.86 0 299843..300778 + 311 157373407 - Ssed_0266 - LysR family transcriptional regulator 267 47.49 0 300775..301671 - 298 157373408 - Ssed_0267 - putative pyruvate formate lyase activating enzyme 268 47.88 0 301643..303196 - 517 157373409 - Ssed_0268 - hypothetical protein 269 51.55 +1 303447..304967 - 506 157373410 - Ssed_0269 - aldehyde dehydrogenase (NAD(+)) 270 49.53 0 305272..307068 + 598 157373411 - Ssed_0270 - Fis family GAF modulated sigma54 specific transcriptional regulator 271 51.48 +1 307242..308222 + 326 157373412 - Ssed_0271 - alcohol dehydrogenase 272 48.58 0 308219..309136 - 305 157373413 - Ssed_0272 - LysR family transcriptional regulator 273 47.99 0 309405..310925 + 506 157373414 - Ssed_0273 - flavocytochrome c 274 41.53 -1 310954..311307 + 117 157373415 - Ssed_0274 - tetraheme cytochrome c 275 45.36 0 311595..312758 + 387 157373416 - Ssed_0275 - porin 276 47.11 0 312872..313735 - 287 157373417 - Ssed_0276 - transcriptional regulator, LysR family protein 277 47.91 0 313869..314513 + 214 157373418 - Ssed_0277 - TetR family transcriptional regulator 278 46.13 0 314510..315877 - 455 157373419 - Ssed_0278 - integral membrane sensor signal transduction histidine kinase 279 45.61 0 315877..316560 - 227 157373420 - Ssed_0279 - two component transcriptional regulator 280 44.38 0 316789..317295 + 168 157373421 - Ssed_0280 - protein of unknown function, Spy-related 281 45.75 0 317399..318268 + 289 157373422 - Ssed_0281 - cation diffusion facilitator family transporter 282 46.89 0 331803..333218 - 471 157373423 - Ssed_0282 - nitrogen metabolism transcriptional regulator NtrC 283 46.11 0 333272..334312 - 346 157373424 - Ssed_0283 - signal transduction histidine kinase, nitrogen specific, NtrB 284 40.22 -1 334444..334980 - 178 157373425 - Ssed_0284 - hypothetical protein 285 47.20 0 335181..335858 - 225 157373426 - Ssed_0285 - ThiJ/PfpI domain-containing protein 286 48.70 0 335941..337098 - 385 157373427 - Ssed_0286 - iron-containing alcohol dehydrogenase 287 44.28 0 337213..337815 - 200 157373428 - Ssed_0287 - TetR family transcriptional regulator 288 39.94 -1 337975..338292 - 105 157373429 - Ssed_0288 - hypothetical protein 289 44.67 0 338414..339613 - 399 157373430 - Ssed_0289 - sodium:dicarboxylate symporter 290 43.53 0 339691..342486 - 931 157373431 - Ssed_0290 - histidine kinase 291 45.69 0 342492..343454 - 320 157373432 - Ssed_0291 - ABC-type nitrate/sulfonate/bicarbonate transport system protein 292 46.60 0 343643..345052 - 469 157373433 - Ssed_0292 - glutamine synthetase 293 46.71 0 345432..347255 + 607 157373434 - Ssed_0293 - GTP-binding protein TypA 294 51.19 +1 347570..348784 - 404 157373435 - Ssed_0294 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 295 52.53 +1 349069..349839 - 256 157373436 - Ssed_0295 - hypothetical protein 296 49.03 0 350171..351406 - 411 157373437 - Ssed_0296 - arabinose efflux permease-like protein 297 47.79 0 351507..351845 - 112 157373438 - Ssed_0297 - flavocytochrome c 298 49.05 0 351912..353438 - 508 157373439 - Ssed_0298 - putative flavoprotein subunit of a reductase 299 50.43 +1 353807..355450 + 547 157373440 - Ssed_0299 - sigma-54 dependent trancsriptional regulator 300 49.54 0 355662..356309 - 215 157373441 - Ssed_0300 - hypothetical protein 301 47.37 0 356351..356578 - 75 157373442 - Ssed_0301 - hypothetical protein 302 49.16 0 356728..357624 + 298 157373443 - Ssed_0302 - ribonuclease BN 303 50.94 +1 357624..358577 + 317 157373444 - Ssed_0303 - alpha/beta hydrolase fold 304 47.37 0 358574..359143 + 189 157373445 - Ssed_0304 - hypothetical protein 305 48.40 0 359212..359649 + 145 157373446 - Ssed_0305 - D-tyrosyl-tRNA deacylase 306 51.05 +1 359652..360125 + 157 157373447 - Ssed_0306 - thioesterase domain-containing protein 307 48.65 0 360318..360911 + 197 157373448 - Ssed_0307 - azoreductase 308 52.02 +1 361077..361397 - 106 157373449 - Ssed_0308 - rhodanese domain-containing protein 309 46.85 0 361522..362268 - 248 157373450 - Ssed_0309 - hypothetical protein 310 53.12 +1 362282..363529 - 415 157373451 - Ssed_0310 - 3-oxoacyl-(acyl carrier protein) synthase II 311 50.41 +1 363567..364292 - 241 157373452 - Ssed_0311 - 3-ketoacyl-(acyl-carrier-protein) reductase 312 49.28 0 364299..364787 - 162 157373453 - Ssed_0312 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ 313 50.75 +1 364784..365989 - 401 157373454 - Ssed_0313 - 3-oxoacyl-(acyl carrier protein) synthase I 314 48.97 0 366060..366692 - 210 157373455 - Ssed_0314 - hypothetical protein 315 50.04 0 366721..367983 - 420 157373456 - Ssed_0315 - tryptophan halogenase 316 48.70 0 367983..370397 - 804 157373457 - Ssed_0316 - hypothetical protein 317 49.25 0 370394..371197 - 267 157373458 - Ssed_0317 - hypothetical protein 318 47.50 0 371194..371673 - 159 157373459 - Ssed_0318 - thioesterase superfamily protein 319 51.92 +1 371673..373232 - 519 157373460 - Ssed_0319 - histidine ammonia-lyase 320 50.23 0 373233..374936 - 567 157373461 - Ssed_0320 - glycosyl transferase family protein 321 46.56 0 374936..375313 - 125 157373462 - Ssed_0321 - thioester dehydrase family protein 322 48.72 0 375306..376670 - 454 157373463 - Ssed_0322 - hypothetical protein 323 42.62 -1 376667..377215 - 182 157373464 - Ssed_0323 - hypothetical protein 324 45.78 0 377215..377463 - 82 157373465 - Ssed_0324 - acyl carrier protein 325 42.75 -1 377472..377726 - 84 157373466 - Ssed_0325 - acyl carrier protein, putative 326 48.61 0 377730..378521 - 263 157373467 - Ssed_0326 - phospholipid/glycerol acyltransferase 327 51.74 +1 378514..379230 - 238 157373468 - Ssed_0327 - hypothetical protein 328 48.74 0 379475..380344 - 289 157373469 - Ssed_0328 - hypothetical protein 329 51.88 +1 380531..382606 - 691 157373470 - Ssed_0329 - ATP-dependent DNA helicase RecG 330 49.73 0 382787..383719 - 310 157373471 - Ssed_0330 - CaCA family Na(+)/Ca(+) antiporter 331 50.78 +1 383891..385558 - 555 157373472 - Ssed_0331 - AMP-dependent synthetase and ligase 332 51.87 +1 385804..386499 - 231 157373473 - Ssed_0332 - tRNA guanosine-2'-O-methyltransferase 333 47.14 0 386567..386950 - 127 157373474 - Ssed_0333 - putative endoribonuclease L-PSP 334 50.62 +1 387040..389145 - 701 157373475 - Ssed_0334 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 335 49.12 0 389159..389443 - 94 157373476 - Ssed_0335 - DNA-directed RNA polymerase subunit omega 336 47.92 0 389500..390123 - 207 157373477 - Ssed_0336 - guanylate kinase 337 51.50 +1 390490..391557 + 355 157373478 - Ssed_0337 - hypothetical protein 338 47.78 0 391663..392631 + 322 157373479 - Ssed_0338 - hypothetical protein 339 48.65 0 392628..393704 + 358 157373480 - Ssed_0339 - aminoglycoside phosphotransferase 340 49.19 0 394139..395614 - 491 157373481 - Ssed_0340 - hypothetical protein 341 50.00 0 395907..396092 + 61 157373482 - Ssed_0341 - hypothetical protein 342 48.29 0 396516..396896 - 126 157373483 - Ssed_0342 - tetraheme cytochrome c 343 49.70 0 396941..398584 - 547 157373484 - Ssed_0343 - phenylalanine/histidine ammonia-lyase 344 55.77 +2 398611..400170 - 519 157373485 - Ssed_0344 - flavocytochrome c flavin subunit, putative 345 48.01 0 400647..401804 - 385 157373486 - Ssed_0345 - hypothetical protein 346 48.17 0 402419..403975 + 518 157373487 - Ssed_0346 - formate hydrogenlyase transcriptional activator, putative 347 47.71 0 403972..404430 - 152 157373488 - Ssed_0347 - hypothetical protein 348 49.70 0 404461..405120 - 219 157373489 - Ssed_0348 - cytoplasmic chaperone TorD family protein 349 50.16 0 405205..405840 - 211 157373490 - Ssed_0349 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 350 51.81 +1 405853..408282 - 809 157373491 - Ssed_0350 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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