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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2905 42.73 -1 3520824..3522665 + 613 157376046 - Ssed_2911 - ATPase domain-containing protein 2906 47.30 0 3522652..3524019 + 455 157376047 - Ssed_2912 - two component, sigma54 specific, Fis family transcriptional regulator 2907 47.27 0 3524067..3525350 - 427 157376048 - Ssed_2913 - major facilitator transporter 2908 48.42 0 3525505..3526392 + 295 157376049 - Ssed_2914 - LysR family transcriptional regulator 2909 51.13 +1 3526421..3529528 - 1035 157376050 - Ssed_2915 - acriflavin resistance protein 2910 48.89 0 3529525..3530874 - 449 157376051 - Ssed_2916 - RND family efflux transporter MFP subunit 2911 49.16 0 3530864..3531520 - 218 157376052 - Ssed_2917 - TetR family transcriptional regulator 2912 45.18 0 3532026..3533435 - 469 157376053 - Ssed_2918 - hypothetical protein 2913 42.65 -1 3533607..3534572 - 321 157376054 - Ssed_2919 - LysR family transcriptional regulator 2914 44.74 0 3534696..3535151 - 151 157376055 - Ssed_2920 - hypothetical protein 2915 47.18 0 3535170..3535826 - 218 157376056 - Ssed_2921 - cytoplasmic chaperone TorD family protein 2916 51.89 +1 3535889..3536524 - 211 157376057 - Ssed_2922 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2917 52.28 +1 3536537..3538969 - 810 157376058 - Ssed_2923 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 2918 50.17 0 3539007..3541025 - 672 157376059 - Ssed_2924 - outer membrane protein 2919 48.95 0 3541041..3541988 - 315 157376060 - Ssed_2925 - cytochrome c family protein 2920 49.25 0 3542980..3543645 - 221 157376061 - Ssed_2926 - response regulator receiver protein 2921 49.24 0 3543723..3544709 - 328 157376062 - Ssed_2927 - fumarylacetoacetate (FAA) hydrolase 2922 48.73 0 3544948..3546486 - 512 157376063 - Ssed_2928 - transcriptional regulator, TyrR 2923 48.35 0 3546715..3547047 - 110 157376064 - Ssed_2929 - pterin-4-alpha-carbinolamine dehydratase 2924 46.99 0 3547107..3547904 - 265 157376065 - Ssed_2930 - phenylalanine 4-monooxygenase 2925 47.56 0 3548201..3549121 + 306 157376066 - Ssed_2931 - UTP--glucose-1-phosphate uridylyltransferase 2926 46.65 0 3549121..3550134 + 337 157376067 - Ssed_2932 - UDP-glucose 4-epimerase 2927 48.26 0 3550253..3550741 + 162 157376068 - Ssed_2933 - ferredoxin-type protein NapF 2928 45.20 0 3550884..3551279 + 131 157376069 - Ssed_2934 - hypothetical protein 2929 46.02 0 3551442..3552119 - 225 157376070 - Ssed_2935 - hypothetical protein 2930 44.31 0 3552166..3552921 - 251 157376071 - Ssed_2936 - hypothetical protein 2931 50.39 +1 3552960..3553850 - 296 157376072 - Ssed_2937 - fructokinase 2932 49.32 0 3554237..3555700 + 487 157376073 - Ssed_2938 - hypothetical protein 2933 48.18 0 3556036..3556776 - 246 157376074 - Ssed_2939 - putative hydrolase 2934 48.10 0 3556848..3558350 - 500 157376075 - Ssed_2940 - two component, sigma54 specific, Fis family transcriptional regulator 2935 44.33 0 3558416..3561925 - 1169 157376076 - Ssed_2941 - putative PAS/PAC sensor protein 2936 46.36 0 3561925..3562845 - 306 157376077 - Ssed_2942 - phosphonate ABC transporter, periplasmic phosphonate-binding protein 2937 44.59 0 3563255..3564667 + 470 157376078 - Ssed_2943 - response regulator receiver modulated serine phosphatase 2938 43.26 0 3564712..3565104 + 130 157376079 - Ssed_2944 - putative anti-sigma regulatory factor, serine/threonine protein kinase 2939 47.37 0 3566021..3566362 + 113 157376080 - Ssed_2945 - anti-sigma-factor antagonist 2940 48.26 0 3566488..3567807 + 439 157376081 - Ssed_2946 - polysaccharide export protein 2941 48.30 0 3567842..3569251 + 469 157376082 - Ssed_2947 - hypothetical protein 2942 48.40 0 3569698..3570945 + 415 157376083 - Ssed_2948 - hypothetical protein 2943 46.64 0 3571540..3572907 + 455 157376084 - Ssed_2949 - polysaccharide biosynthesis protein 2944 47.80 0 3572897..3573940 + 347 157376085 - Ssed_2950 - glycosyl transferase family protein 2945 47.88 0 3574488..3576638 + 716 157376086 - Ssed_2951 - WecB/TagA/CpsF family glycosyl transferase 2946 46.64 0 3576695..3578212 + 505 157376087 - Ssed_2952 - nucleotidyl transferase 2947 44.95 0 3578303..3578698 + 131 157376088 - Ssed_2953 - glycerol-3-phosphate cytidylyltransferase 2948 44.55 0 3578713..3580023 + 436 157376089 - Ssed_2954 - poly(glycerophosphate) glycerophosphotransferase 2949 45.31 0 3579994..3580920 - 308 157376090 - Ssed_2955 - glucose-1-phosphate thymidylyltransferase 2950 44.82 0 3581095..3582060 - 321 157376091 - Ssed_2956 - acetyltransferase 2951 48.18 0 3582264..3582950 - 228 157376092 - Ssed_2957 - adenylyl-sulfate kinase 2952 35.88 -2 3583014..3583367 - 117 157376093 - Ssed_2958 - hypothetical protein 2953 49.13 0 3583856..3585583 - 575 157376094 - Ssed_2959 - TrkA domain-containing protein 2954 46.91 0 3585845..3587266 - 473 157376095 - Ssed_2960 - Sulfate adenylyltransferase 2955 48.01 0 3587486..3588391 - 301 157376096 - Ssed_2961 - sulfate adenylyltransferase subunit 2 2956 46.74 0 3588993..3590573 + 526 157376097 - Ssed_2962 - beta-lactamase domain-containing protein 2957 36.42 -2 3591027..3592226 + 399 157376098 - Ssed_2963 - hypothetical protein 2958 36.50 -2 3592353..3593267 - 304 157376099 - Ssed_2964 - hypothetical protein 2959 34.79 -2 3593301..3593987 - 228 157376100 - Ssed_2965 - WecB/TagA/CpsF family glycosyl transferase 2960 42.28 -1 3594084..3595223 - 379 157376101 - Ssed_2966 - UDP-N-acetylglucosamine 2-epimerase 2961 40.51 -1 3595649..3596749 - 366 157376102 - Ssed_2967 - UDP-N-acetylglucosamine 2-epimerase 2962 39.66 -1 3596838..3597374 - 178 157376103 - Ssed_2968 - acetyltransferase 2963 39.19 -2 3597371..3598720 - 449 157376104 - Ssed_2969 - O-antigen and teichoic acid-like export protein 2964 43.78 0 3598720..3599820 - 366 157376105 - Ssed_2970 - DegT/DnrJ/EryC1/StrS family protein 2965 44.21 0 3599826..3600404 - 192 157376106 - Ssed_2971 - putative acetyltransferase 2966 40.95 -1 3600475..3601419 - 314 157376107 - Ssed_2972 - MviM protein 2967 42.06 -1 3601422..3602693 - 423 157376108 - Ssed_2973 - UDP-glucose/GDP-mannose dehydrogenase 2968 39.63 -1 3602758..3604059 - 433 157376109 - Ssed_2974 - hypothetical protein 2969 43.50 0 3604078..3605031 - 317 157376110 - Ssed_2975 - chain length determinant family protein 2970 41.72 -1 3605078..3605530 - 150 157376111 - Ssed_2976 - hypothetical protein 2971 41.41 -1 3605527..3606009 - 160 157376112 - Ssed_2977 - hypothetical protein 2972 44.23 0 3606158..3607231 - 357 157376113 - Ssed_2978 - glycosyltransferase-like protein 2973 42.31 -1 3607221..3608747 - 508 157376114 - Ssed_2979 - hypothetical protein 2974 42.77 -1 3608807..3609760 - 317 157376115 - Ssed_2980 - cell wall biosynthesis glycosyltransferase-like protein 2975 45.70 0 3609753..3610916 - 387 157376116 - Ssed_2981 - hypothetical protein 2976 48.08 0 3610920..3612011 - 363 157376117 - Ssed_2982 - nitroreductase-like protein 2977 44.94 0 3612206..3613489 - 427 157376118 - Ssed_2983 - polysaccharide biosynthesis protein 2978 44.10 0 3613868..3614833 - 321 157376119 - Ssed_2984 - acetyltransferase 2979 46.43 0 3615084..3615755 - 223 157376120 - Ssed_2985 - adenylyl-sulfate kinase 2980 44.85 0 3615825..3617552 - 575 157376121 - Ssed_2986 - TrkA domain-containing protein 2981 46.81 0 3617649..3619058 - 469 157376122 - Ssed_2987 - Sulfate adenylyltransferase 2982 46.36 0 3619283..3620188 - 301 157376123 - Ssed_2988 - sulfate adenylyltransferase subunit 2 2983 38.00 -2 3621109..3621258 - 49 157376124 - Ssed_2989 - hypothetical protein 2984 40.60 -1 3621605..3622663 - 352 157376125 - Ssed_2990 - dTDP-glucose 4,6-dehydratase 2985 32.00 -2 3622847..3623749 - 300 157376126 - Ssed_2991 - glycosyl transferase family protein 2986 35.54 -2 3623739..3624737 - 332 157376127 - Ssed_2992 - glycosyltransferase-like protein 2987 44.25 0 3625133..3625306 - 57 157376128 - Ssed_2993 - putative transposase 2988 35.62 -2 3626188..3626886 - 232 157376129 - Ssed_2997 - hypothetical protein 2989 32.15 -2 3626895..3628079 - 394 157376130 - Ssed_2998 - hypothetical protein 2990 31.55 -2 3628079..3628921 - 280 157376131 - Ssed_2999 - hypothetical protein 2991 35.05 -2 3629003..3629995 - 330 157376132 - Ssed_3000 - NDP-sugar dehydratase or epimerase 2992 35.19 -2 3630106..3631671 - 521 157376133 - Ssed_3001 - hypothetical protein 2993 32.37 -2 3631668..3632813 - 381 157376134 - Ssed_3002 - hypothetical protein 2994 36.85 -2 3632848..3633984 - 378 157376135 - Ssed_3003 - pyridoxal phosphate-dependent enzyme 2995 35.17 -2 3635322..3636518 - 398 157376136 - Ssed_3004 - hypothetical protein 2996 35.27 -2 3636931..3637755 - 274 157376137 - Ssed_3005 - hypothetical protein 2997 37.75 -2 3637823..3638818 - 331 157376138 - Ssed_3006 - hypothetical protein 2998 36.16 -2 3638917..3640188 - 423 157376139 - Ssed_3007 - hypothetical protein 2999 35.25 -2 3640188..3640970 - 260 157376140 - Ssed_3008 - HAD superfamily hydrolase-like protein 3000 36.14 -2 3640987..3641877 - 296 157376141 - Ssed_3009 - glycosyl transferase family protein 3001 36.71 -2 3642191..3642604 - 137 157376142 - Ssed_3010 - rfbqrso22-4-like protein 3002 40.68 -1 3642790..3643701 - 303 157376143 - Ssed_3011 - dTDP-4-dehydrorhamnose reductase 3003 38.46 -2 3643747..3644292 - 181 157376144 - Ssed_3012 - dTDP-4-dehydrorhamnose 3,5-epimerase 3004 40.97 -1 3644322..3645212 - 296 157376145 - Ssed_3013 - glucose-1-phosphate thymidylyltransferase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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