version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2870 44.23 0 3481832..3483052 + 406 157376011 - Ssed_2876 - NnrS family protein 2871 43.21 0 3483351..3483755 + 134 157376012 - Ssed_2877 - phosphate-starvation-inducible E 2872 41.90 -1 3483907..3484221 + 104 157376013 - Ssed_2878 - type IV pilus assembly PilZ 2873 44.25 0 3484322..3484990 + 222 157376014 - Ssed_2879 - hypothetical protein 2874 39.03 -2 3484977..3485327 + 116 157376015 - Ssed_2880 - RepA domain-containing protein 2875 42.39 -1 3485390..3485632 - 80 157376016 - Ssed_2881 - hypothetical protein 2876 44.72 0 3485795..3487471 + 558 157376017 - Ssed_2882 - signal transduction histidine kinase, LytS 2877 44.02 0 3487468..3488178 + 236 157376018 - Ssed_2883 - putative two-component response-regulatory protein YehT 2878 47.25 0 3488432..3489868 + 478 157376019 - Ssed_2884 - carbon starvation protein CstA 2879 44.26 0 3489956..3490495 - 179 157376020 - Ssed_2885 - YaeQ family protein 2880 46.93 0 3490599..3491510 - 303 157376021 - Ssed_2886 - precorrin-2 oxidase / ferrochelatase 2881 48.33 0 3491588..3491947 - 119 157376022 - Ssed_2887 - rhodanese-like protein 2882 47.17 0 3492017..3492334 - 105 157376023 - Ssed_2888 - hypothetical protein 2883 44.51 0 3492537..3493484 - 315 157376024 - Ssed_2889 - preprotein translocase subunit SecF 2884 46.62 0 3493497..3495347 - 616 157376025 - Ssed_2890 - preprotein translocase subunit SecD 2885 37.54 -2 3495365..3495697 - 110 157376026 - Ssed_2891 - preprotein translocase subunit YajC 2886 45.41 0 3495727..3496860 - 377 157376027 - Ssed_2892 - queuine tRNA-ribosyltransferase 2887 45.09 0 3497033..3498070 - 345 157376028 - Ssed_2893 - S-adenosylmethionine--tRNA-ribosyltransferase-isomerase 2888 37.04 -2 3498142..3498303 - 53 157376029 - Ssed_2894 - hypothetical protein 2889 45.79 0 3498464..3499057 + 197 157376030 - Ssed_2895 - hypothetical protein 2890 44.14 0 3499151..3499807 + 218 157376031 - Ssed_2896 - pseudouridine synthase 2891 43.28 0 3499926..3500327 - 133 157376032 - Ssed_2897 - hypothetical protein 2892 46.65 0 3500864..3502102 - 412 157376033 - Ssed_2898 - serine/threonine transporter SstT 2893 45.72 0 3502489..3503376 - 295 157376034 - Ssed_2899 - response regulator receiver modulated CheW protein 2894 46.19 0 3503470..3504993 - 507 157376035 - Ssed_2900 - phospholipase D/transphosphatidylase 2895 47.35 0 3505145..3505615 - 156 157376036 - Ssed_2901 - dual specificity protein phosphatase 2896 46.27 0 3505708..3507006 - 432 157376037 - Ssed_2902 - DEAD/DEAH box helicase domain-containing protein 2897 46.34 0 3507146..3507760 - 204 157376038 - Ssed_2903 - methylated-DNA--(protein)-cysteine S-methyltransferase 2898 44.80 0 3507757..3509265 - 502 157376039 - Ssed_2904 - AraC family transcriptional regulator 2899 44.81 0 3509445..3511274 + 609 157376040 - Ssed_2905 - ABC transporter-related protein 2900 43.33 0 3513868..3515277 - 469 157376041 - Ssed_2906 - glutamyl-tRNA synthetase 2901 43.42 0 3516874..3517101 + 75 157376042 - Ssed_2907 - hypothetical protein 2902 43.19 0 3517496..3518530 + 344 157376043 - Ssed_2908 - TRAP dicarboxylate transporter, DctP subunit 2903 42.55 -1 3518607..3519311 + 234 157376044 - Ssed_2909 - tripartite ATP-independent periplasmic transporter, DctQ component 2904 47.85 0 3519311..3520708 + 465 157376045 - Ssed_2910 - TRAP dicarboxylate transporter, DctM subunit 2905 42.73 -1 3520824..3522665 + 613 157376046 - Ssed_2911 - ATPase domain-containing protein 2906 47.30 0 3522652..3524019 + 455 157376047 - Ssed_2912 - two component, sigma54 specific, Fis family transcriptional regulator 2907 47.27 0 3524067..3525350 - 427 157376048 - Ssed_2913 - major facilitator transporter 2908 48.42 0 3525505..3526392 + 295 157376049 - Ssed_2914 - LysR family transcriptional regulator 2909 51.13 +1 3526421..3529528 - 1035 157376050 - Ssed_2915 - acriflavin resistance protein 2910 48.89 0 3529525..3530874 - 449 157376051 - Ssed_2916 - RND family efflux transporter MFP subunit 2911 49.16 0 3530864..3531520 - 218 157376052 - Ssed_2917 - TetR family transcriptional regulator 2912 45.18 0 3532026..3533435 - 469 157376053 - Ssed_2918 - hypothetical protein 2913 42.65 -1 3533607..3534572 - 321 157376054 - Ssed_2919 - LysR family transcriptional regulator 2914 44.74 0 3534696..3535151 - 151 157376055 - Ssed_2920 - hypothetical protein 2915 47.18 0 3535170..3535826 - 218 157376056 - Ssed_2921 - cytoplasmic chaperone TorD family protein 2916 51.89 +1 3535889..3536524 - 211 157376057 - Ssed_2922 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2917 52.28 +1 3536537..3538969 - 810 157376058 - Ssed_2923 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 2918 50.17 0 3539007..3541025 - 672 157376059 - Ssed_2924 - outer membrane protein 2919 48.95 0 3541041..3541988 - 315 157376060 - Ssed_2925 - cytochrome c family protein 2920 49.25 0 3542980..3543645 - 221 157376061 - Ssed_2926 - response regulator receiver protein 2921 49.24 0 3543723..3544709 - 328 157376062 - Ssed_2927 - fumarylacetoacetate (FAA) hydrolase 2922 48.73 0 3544948..3546486 - 512 157376063 - Ssed_2928 - transcriptional regulator, TyrR 2923 48.35 0 3546715..3547047 - 110 157376064 - Ssed_2929 - pterin-4-alpha-carbinolamine dehydratase 2924 46.99 0 3547107..3547904 - 265 157376065 - Ssed_2930 - phenylalanine 4-monooxygenase 2925 47.56 0 3548201..3549121 + 306 157376066 - Ssed_2931 - UTP--glucose-1-phosphate uridylyltransferase 2926 46.65 0 3549121..3550134 + 337 157376067 - Ssed_2932 - UDP-glucose 4-epimerase 2927 48.26 0 3550253..3550741 + 162 157376068 - Ssed_2933 - ferredoxin-type protein NapF 2928 45.20 0 3550884..3551279 + 131 157376069 - Ssed_2934 - hypothetical protein 2929 46.02 0 3551442..3552119 - 225 157376070 - Ssed_2935 - hypothetical protein 2930 44.31 0 3552166..3552921 - 251 157376071 - Ssed_2936 - hypothetical protein 2931 50.39 +1 3552960..3553850 - 296 157376072 - Ssed_2937 - fructokinase 2932 49.32 0 3554237..3555700 + 487 157376073 - Ssed_2938 - hypothetical protein 2933 48.18 0 3556036..3556776 - 246 157376074 - Ssed_2939 - putative hydrolase 2934 48.10 0 3556848..3558350 - 500 157376075 - Ssed_2940 - two component, sigma54 specific, Fis family transcriptional regulator 2935 44.33 0 3558416..3561925 - 1169 157376076 - Ssed_2941 - putative PAS/PAC sensor protein 2936 46.36 0 3561925..3562845 - 306 157376077 - Ssed_2942 - phosphonate ABC transporter, periplasmic phosphonate-binding protein 2937 44.59 0 3563255..3564667 + 470 157376078 - Ssed_2943 - response regulator receiver modulated serine phosphatase 2938 43.26 0 3564712..3565104 + 130 157376079 - Ssed_2944 - putative anti-sigma regulatory factor, serine/threonine protein kinase 2939 47.37 0 3566021..3566362 + 113 157376080 - Ssed_2945 - anti-sigma-factor antagonist 2940 48.26 0 3566488..3567807 + 439 157376081 - Ssed_2946 - polysaccharide export protein 2941 48.30 0 3567842..3569251 + 469 157376082 - Ssed_2947 - hypothetical protein 2942 48.40 0 3569698..3570945 + 415 157376083 - Ssed_2948 - hypothetical protein 2943 46.64 0 3571540..3572907 + 455 157376084 - Ssed_2949 - polysaccharide biosynthesis protein 2944 47.80 0 3572897..3573940 + 347 157376085 - Ssed_2950 - glycosyl transferase family protein 2945 47.88 0 3574488..3576638 + 716 157376086 - Ssed_2951 - WecB/TagA/CpsF family glycosyl transferase 2946 46.64 0 3576695..3578212 + 505 157376087 - Ssed_2952 - nucleotidyl transferase 2947 44.95 0 3578303..3578698 + 131 157376088 - Ssed_2953 - glycerol-3-phosphate cytidylyltransferase 2948 44.55 0 3578713..3580023 + 436 157376089 - Ssed_2954 - poly(glycerophosphate) glycerophosphotransferase 2949 45.31 0 3579994..3580920 - 308 157376090 - Ssed_2955 - glucose-1-phosphate thymidylyltransferase 2950 44.82 0 3581095..3582060 - 321 157376091 - Ssed_2956 - acetyltransferase 2951 48.18 0 3582264..3582950 - 228 157376092 - Ssed_2957 - adenylyl-sulfate kinase 2952 35.88 -2 3583014..3583367 - 117 157376093 - Ssed_2958 - hypothetical protein 2953 49.13 0 3583856..3585583 - 575 157376094 - Ssed_2959 - TrkA domain-containing protein 2954 46.91 0 3585845..3587266 - 473 157376095 - Ssed_2960 - Sulfate adenylyltransferase 2955 48.01 0 3587486..3588391 - 301 157376096 - Ssed_2961 - sulfate adenylyltransferase subunit 2 2956 46.74 0 3588993..3590573 + 526 157376097 - Ssed_2962 - beta-lactamase domain-containing protein 2957 36.42 -2 3591027..3592226 + 399 157376098 - Ssed_2963 - hypothetical protein 2958 36.50 -2 3592353..3593267 - 304 157376099 - Ssed_2964 - hypothetical protein 2959 34.79 -2 3593301..3593987 - 228 157376100 - Ssed_2965 - WecB/TagA/CpsF family glycosyl transferase 2960 42.28 -1 3594084..3595223 - 379 157376101 - Ssed_2966 - UDP-N-acetylglucosamine 2-epimerase 2961 40.51 -1 3595649..3596749 - 366 157376102 - Ssed_2967 - UDP-N-acetylglucosamine 2-epimerase 2962 39.66 -1 3596838..3597374 - 178 157376103 - Ssed_2968 - acetyltransferase 2963 39.19 -2 3597371..3598720 - 449 157376104 - Ssed_2969 - O-antigen and teichoic acid-like export protein 2964 43.78 0 3598720..3599820 - 366 157376105 - Ssed_2970 - DegT/DnrJ/EryC1/StrS family protein 2965 44.21 0 3599826..3600404 - 192 157376106 - Ssed_2971 - putative acetyltransferase 2966 40.95 -1 3600475..3601419 - 314 157376107 - Ssed_2972 - MviM protein 2967 42.06 -1 3601422..3602693 - 423 157376108 - Ssed_2973 - UDP-glucose/GDP-mannose dehydrogenase 2968 39.63 -1 3602758..3604059 - 433 157376109 - Ssed_2974 - hypothetical protein 2969 43.50 0 3604078..3605031 - 317 157376110 - Ssed_2975 - chain length determinant family protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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