version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2819 46.35 0 3413259..3414272 - 337 157375960 - Ssed_2825 - tetraacyldisaccharide 4'-kinase 2820 47.16 0 3414273..3416087 - 604 157375961 - Ssed_2826 - ABC transporter, ATP-binding protein MsbA 2821 46.31 0 3416120..3418423 - 767 157375962 - Ssed_2827 - DNA internalization-related competence protein ComEC/Rec2 2822 45.21 0 3418482..3418961 + 159 157375963 - Ssed_2828 - hypothetical protein 2823 47.30 0 3419126..3420385 - 419 157375964 - Ssed_2829 - LolC/E family lipoprotein releasing system, transmembrane protein 2824 50.43 +1 3420382..3421077 - 231 157375965 - Ssed_2830 - lipoprotein releasing system, ATP-binding protein 2825 47.16 0 3421203..3422453 - 416 157375966 - Ssed_2831 - LolC/E family lipoprotein releasing system, transmembrane protein 2826 44.22 0 3422533..3423138 + 201 157375967 - Ssed_2832 - hypothetical protein 2827 48.19 0 3423275..3426748 + 1157 157375968 - Ssed_2833 - transcription-repair coupling factor 2828 43.46 0 3426750..3427697 + 315 157375969 - Ssed_2834 - hypothetical protein 2829 45.29 0 3427828..3428103 - 91 157375970 - Ssed_2835 - acylphosphatase 2830 42.96 -1 3428622..3429161 - 179 157375971 - Ssed_2836 - hypothetical protein 2831 47.80 0 3429254..3430255 - 333 157375972 - Ssed_2837 - beta-hexosaminidase 2832 48.08 0 3430588..3431964 + 458 157375973 - Ssed_2838 - L-serine ammonia-lyase 2833 45.23 0 3432085..3433059 - 324 157375974 - Ssed_2839 - transcriptional regulator CysB 2834 46.77 0 3433283..3434056 + 257 157375975 - Ssed_2840 - hypothetical protein 2835 47.57 0 3434354..3437023 - 889 157375976 - Ssed_2841 - DNA topoisomerase I 2836 51.20 +1 3437553..3438890 + 445 157375977 - Ssed_2842 - succinylarginine dihydrolase 2837 46.56 0 3438969..3441485 - 838 157375978 - Ssed_2843 - Ig domain-containing protein 2838 48.89 0 3441702..3443012 + 436 157375979 - Ssed_2844 - sodium:dicarboxylate symporter 2839 46.90 0 3443161..3444465 - 434 157375980 - Ssed_2845 - inosine kinase 2840 46.83 0 3444642..3445649 - 335 157375981 - Ssed_2846 - ferrochelatase 2841 48.99 0 3445828..3446472 - 214 157375982 - Ssed_2847 - nucleoside-triphosphate--adenylate kinase 2842 45.74 0 3446671..3447516 - 281 157375983 - Ssed_2848 - thioredoxin domain-containing protein 2843 46.58 0 3447640..3449556 - 638 157375984 - Ssed_2849 - heat shock protein 90 2844 51.83 +1 3449753..3450352 - 199 157375985 - Ssed_2850 - recombination protein RecR 2845 47.27 0 3450365..3450694 - 109 157375986 - Ssed_2851 - hypothetical protein 2846 48.61 0 3450779..3453646 - 955 157375987 - Ssed_2852 - DNA-directed DNA polymerase 2847 43.42 0 3453756..3454310 - 184 157375988 - Ssed_2853 - adenine phosphoribosyltransferase 2848 43.10 0 3454526..3454945 - 139 157375989 - Ssed_2854 - hypothetical protein 2849 35.83 -2 3455500..3455619 - 39 157375990 - Ssed_2855 - hypothetical protein 2850 41.53 -1 3455780..3456523 - 247 157375991 - Ssed_2856 - hypothetical protein 2851 45.04 0 3456523..3457359 - 278 157375992 - Ssed_2857 - hypothetical protein 2852 50.73 +1 3457533..3458078 - 181 157375993 - Ssed_2858 - hypothetical protein 2853 48.54 0 3458650..3459576 + 308 157375994 - Ssed_2859 - dihydrouridine synthase, DuS 2854 43.70 0 3459794..3460150 + 118 157375995 - Ssed_2860 - TraR/DksA family transcriptional regulator 2855 45.23 0 3460303..3462924 - 873 157375996 - Ssed_2861 - TonB-dependent receptor 2856 46.99 0 3463824..3464255 - 143 157375997 - Ssed_2862 - nucleoside-diphosphate kinase 2857 45.93 0 3464544..3464789 - 81 157375998 - Ssed_2863 - hypothetical protein 2858 42.80 -1 3464986..3466137 - 383 157375999 - Ssed_2864 - two-component response regulator 2859 41.78 -1 3466109..3472750 - 2213 157376000 - Ssed_2865 - Signal transduction histidine kinase-like protein 2860 45.13 0 3473317..3473655 - 112 157376001 - Ssed_2866 - ferredoxin, 2Fe-2S 2861 47.61 0 3473673..3475535 - 620 157376002 - Ssed_2867 - chaperone protein HscA 2862 42.75 -1 3475616..3476146 - 176 157376003 - Ssed_2868 - co-chaperone HscB 2863 42.59 -1 3476166..3476489 - 107 157376004 - Ssed_2869 - iron-sulfur cluster assembly protein IscA 2864 40.62 -1 3476504..3476887 - 127 157376005 - Ssed_2870 - scaffold protein 2865 46.91 0 3476924..3478138 - 404 157376006 - Ssed_2871 - cysteine desulfurase IscS 2866 44.37 0 3478214..3478675 - 153 157376007 - Ssed_2872 - BadM/Rrf2 family transcriptional regulator 2867 49.03 0 3478894..3479715 - 273 157376008 - Ssed_2873 - Serine O-acetyltransferase 2868 46.80 0 3479730..3480494 - 254 157376009 - Ssed_2874 - RNA methyltransferase 2869 44.28 0 3480844..3481647 + 267 157376010 - Ssed_2875 - inositol-phosphate phosphatase 2870 44.23 0 3481832..3483052 + 406 157376011 - Ssed_2876 - NnrS family protein 2871 43.21 0 3483351..3483755 + 134 157376012 - Ssed_2877 - phosphate-starvation-inducible E 2872 41.90 -1 3483907..3484221 + 104 157376013 - Ssed_2878 - type IV pilus assembly PilZ 2873 44.25 0 3484322..3484990 + 222 157376014 - Ssed_2879 - hypothetical protein 2874 39.03 -2 3484977..3485327 + 116 157376015 - Ssed_2880 - RepA domain-containing protein 2875 42.39 -1 3485390..3485632 - 80 157376016 - Ssed_2881 - hypothetical protein 2876 44.72 0 3485795..3487471 + 558 157376017 - Ssed_2882 - signal transduction histidine kinase, LytS 2877 44.02 0 3487468..3488178 + 236 157376018 - Ssed_2883 - putative two-component response-regulatory protein YehT 2878 47.25 0 3488432..3489868 + 478 157376019 - Ssed_2884 - carbon starvation protein CstA 2879 44.26 0 3489956..3490495 - 179 157376020 - Ssed_2885 - YaeQ family protein 2880 46.93 0 3490599..3491510 - 303 157376021 - Ssed_2886 - precorrin-2 oxidase / ferrochelatase 2881 48.33 0 3491588..3491947 - 119 157376022 - Ssed_2887 - rhodanese-like protein 2882 47.17 0 3492017..3492334 - 105 157376023 - Ssed_2888 - hypothetical protein 2883 44.51 0 3492537..3493484 - 315 157376024 - Ssed_2889 - preprotein translocase subunit SecF 2884 46.62 0 3493497..3495347 - 616 157376025 - Ssed_2890 - preprotein translocase subunit SecD 2885 37.54 -2 3495365..3495697 - 110 157376026 - Ssed_2891 - preprotein translocase subunit YajC 2886 45.41 0 3495727..3496860 - 377 157376027 - Ssed_2892 - queuine tRNA-ribosyltransferase 2887 45.09 0 3497033..3498070 - 345 157376028 - Ssed_2893 - S-adenosylmethionine--tRNA-ribosyltransferase-isomerase 2888 37.04 -2 3498142..3498303 - 53 157376029 - Ssed_2894 - hypothetical protein 2889 45.79 0 3498464..3499057 + 197 157376030 - Ssed_2895 - hypothetical protein 2890 44.14 0 3499151..3499807 + 218 157376031 - Ssed_2896 - pseudouridine synthase 2891 43.28 0 3499926..3500327 - 133 157376032 - Ssed_2897 - hypothetical protein 2892 46.65 0 3500864..3502102 - 412 157376033 - Ssed_2898 - serine/threonine transporter SstT 2893 45.72 0 3502489..3503376 - 295 157376034 - Ssed_2899 - response regulator receiver modulated CheW protein 2894 46.19 0 3503470..3504993 - 507 157376035 - Ssed_2900 - phospholipase D/transphosphatidylase 2895 47.35 0 3505145..3505615 - 156 157376036 - Ssed_2901 - dual specificity protein phosphatase 2896 46.27 0 3505708..3507006 - 432 157376037 - Ssed_2902 - DEAD/DEAH box helicase domain-containing protein 2897 46.34 0 3507146..3507760 - 204 157376038 - Ssed_2903 - methylated-DNA--(protein)-cysteine S-methyltransferase 2898 44.80 0 3507757..3509265 - 502 157376039 - Ssed_2904 - AraC family transcriptional regulator 2899 44.81 0 3509445..3511274 + 609 157376040 - Ssed_2905 - ABC transporter-related protein 2900 43.33 0 3513868..3515277 - 469 157376041 - Ssed_2906 - glutamyl-tRNA synthetase 2901 43.42 0 3516874..3517101 + 75 157376042 - Ssed_2907 - hypothetical protein 2902 43.19 0 3517496..3518530 + 344 157376043 - Ssed_2908 - TRAP dicarboxylate transporter, DctP subunit 2903 42.55 -1 3518607..3519311 + 234 157376044 - Ssed_2909 - tripartite ATP-independent periplasmic transporter, DctQ component 2904 47.85 0 3519311..3520708 + 465 157376045 - Ssed_2910 - TRAP dicarboxylate transporter, DctM subunit 2905 42.73 -1 3520824..3522665 + 613 157376046 - Ssed_2911 - ATPase domain-containing protein 2906 47.30 0 3522652..3524019 + 455 157376047 - Ssed_2912 - two component, sigma54 specific, Fis family transcriptional regulator 2907 47.27 0 3524067..3525350 - 427 157376048 - Ssed_2913 - major facilitator transporter 2908 48.42 0 3525505..3526392 + 295 157376049 - Ssed_2914 - LysR family transcriptional regulator 2909 51.13 +1 3526421..3529528 - 1035 157376050 - Ssed_2915 - acriflavin resistance protein 2910 48.89 0 3529525..3530874 - 449 157376051 - Ssed_2916 - RND family efflux transporter MFP subunit 2911 49.16 0 3530864..3531520 - 218 157376052 - Ssed_2917 - TetR family transcriptional regulator 2912 45.18 0 3532026..3533435 - 469 157376053 - Ssed_2918 - hypothetical protein 2913 42.65 -1 3533607..3534572 - 321 157376054 - Ssed_2919 - LysR family transcriptional regulator 2914 44.74 0 3534696..3535151 - 151 157376055 - Ssed_2920 - hypothetical protein 2915 47.18 0 3535170..3535826 - 218 157376056 - Ssed_2921 - cytoplasmic chaperone TorD family protein 2916 51.89 +1 3535889..3536524 - 211 157376057 - Ssed_2922 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2917 52.28 +1 3536537..3538969 - 810 157376058 - Ssed_2923 - anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family protein 2918 50.17 0 3539007..3541025 - 672 157376059 - Ssed_2924 - outer membrane protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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