version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2781 50.00 0 3360453..3360836 - 127 157375922 - Ssed_2787 - glyoxalase family protein 2782 46.67 0 3360960..3362429 - 489 157375923 - Ssed_2788 - hypothetical protein 2783 47.45 0 3362558..3363223 - 221 157375924 - Ssed_2789 - hypothetical protein 2784 52.65 +1 3363468..3364202 + 244 157375925 - Ssed_2790 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 2785 50.68 +1 3364202..3366622 + 806 157375926 - Ssed_2791 - hypothetical protein 2786 46.04 0 3366625..3367230 - 201 157375927 - Ssed_2792 - ribosomal protein N-acetylase-like protein 2787 48.18 0 3367234..3367866 - 210 157375928 - Ssed_2793 - putative chloramphenicol acetyltransferase 2788 44.69 0 3368015..3368560 + 181 157375929 - Ssed_2794 - MerR family transcriptional regulator 2789 43.39 0 3368711..3369247 - 178 157375930 - Ssed_2795 - acetyltransferase 2790 46.58 0 3369703..3376164 - 2153 157375931 - Ssed_2796 - fibronectin type III domain-containing protein 2791 37.83 -2 3376978..3377355 - 125 157375932 - Ssed_2797 - hypothetical protein 2792 51.48 +1 3377584..3379644 - 686 157375933 - Ssed_2798 - aspartate carbamoyltransferase 2793 52.06 +1 3379680..3381884 - 734 157375934 - Ssed_2799 - nitrate reductase 2794 46.43 0 3382164..3382751 + 195 157375935 - Ssed_2800 - ecotin precursor 2795 43.74 0 3383011..3383433 + 140 157375936 - Ssed_2801 - putative lipoprotein 2796 50.39 +1 3383966..3385231 + 421 157375937 - Ssed_2802 - cytosine permease 2797 50.39 +1 3385242..3386537 + 431 157375938 - Ssed_2803 - cytosine deaminase 2798 47.61 0 3386633..3388453 - 606 157375939 - Ssed_2804 - anaerobic ribonucleoside triphosphate reductase 2799 44.81 0 3388466..3388918 - 150 157375940 - Ssed_2805 - hypothetical protein 2800 51.22 +1 3389301..3389792 + 163 157375941 - Ssed_2806 - GCN5-related N-acetyltransferase 2801 47.15 0 3389880..3390125 + 81 157375942 - Ssed_2807 - hypothetical protein 2802 53.46 +1 3390194..3390685 - 163 157375943 - Ssed_2808 - hypothetical protein 2803 49.42 0 3390685..3391461 - 258 157375944 - Ssed_2809 - NAD-dependent deacetylase 2804 45.14 0 3392046..3392477 + 143 157375945 - Ssed_2810 - ferric uptake regulator 2805 46.51 0 3392632..3393504 - 290 157375946 - Ssed_2811 - succinyl-CoA synthetase, alpha subunit 2806 45.84 0 3393504..3394670 - 388 157375947 - Ssed_2812 - succinyl-CoA synthetase subunit beta 2807 48.06 0 3394784..3395971 - 395 157375948 - Ssed_2813 - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2808 47.89 0 3396001..3398823 - 940 157375949 - Ssed_2814 - alpha-ketoglutarate decarboxylase 2809 43.08 0 3399003..3399710 - 235 157375950 - Ssed_2815 - succinate dehydrogenase iron-sulfur subunit 2810 49.58 0 3399721..3401487 - 588 157375951 - Ssed_2816 - succinate dehydrogenase flavoprotein subunit 2811 46.84 0 3401488..3401835 - 115 157375952 - Ssed_2817 - putative succinate dehydrogenase, hydrophobic subunit 2812 45.33 0 3401829..3402203 - 124 157375953 - Ssed_2818 - succinate dehydrogenase, cytochrome b subunit 2813 46.08 0 3402633..3403919 + 428 157375954 - Ssed_2819 - type II citrate synthase 2814 47.25 0 3404485..3405576 + 363 157375955 - Ssed_2820 - RND family efflux transporter MFP subunit 2815 49.17 0 3405590..3408853 + 1087 157375956 - Ssed_2821 - acriflavin resistance protein 2816 49.81 0 3408850..3411933 + 1027 157375957 - Ssed_2822 - acriflavin resistance protein 2817 47.57 0 3412072..3412935 + 287 157375958 - Ssed_2823 - beta-lactamase domain-containing protein 2818 42.62 -1 3413044..3413226 - 60 157375959 - Ssed_2824 - hypothetical protein 2819 46.35 0 3413259..3414272 - 337 157375960 - Ssed_2825 - tetraacyldisaccharide 4'-kinase 2820 47.16 0 3414273..3416087 - 604 157375961 - Ssed_2826 - ABC transporter, ATP-binding protein MsbA 2821 46.31 0 3416120..3418423 - 767 157375962 - Ssed_2827 - DNA internalization-related competence protein ComEC/Rec2 2822 45.21 0 3418482..3418961 + 159 157375963 - Ssed_2828 - hypothetical protein 2823 47.30 0 3419126..3420385 - 419 157375964 - Ssed_2829 - LolC/E family lipoprotein releasing system, transmembrane protein 2824 50.43 +1 3420382..3421077 - 231 157375965 - Ssed_2830 - lipoprotein releasing system, ATP-binding protein 2825 47.16 0 3421203..3422453 - 416 157375966 - Ssed_2831 - LolC/E family lipoprotein releasing system, transmembrane protein 2826 44.22 0 3422533..3423138 + 201 157375967 - Ssed_2832 - hypothetical protein 2827 48.19 0 3423275..3426748 + 1157 157375968 - Ssed_2833 - transcription-repair coupling factor 2828 43.46 0 3426750..3427697 + 315 157375969 - Ssed_2834 - hypothetical protein 2829 45.29 0 3427828..3428103 - 91 157375970 - Ssed_2835 - acylphosphatase 2830 42.96 -1 3428622..3429161 - 179 157375971 - Ssed_2836 - hypothetical protein 2831 47.80 0 3429254..3430255 - 333 157375972 - Ssed_2837 - beta-hexosaminidase 2832 48.08 0 3430588..3431964 + 458 157375973 - Ssed_2838 - L-serine ammonia-lyase 2833 45.23 0 3432085..3433059 - 324 157375974 - Ssed_2839 - transcriptional regulator CysB 2834 46.77 0 3433283..3434056 + 257 157375975 - Ssed_2840 - hypothetical protein 2835 47.57 0 3434354..3437023 - 889 157375976 - Ssed_2841 - DNA topoisomerase I 2836 51.20 +1 3437553..3438890 + 445 157375977 - Ssed_2842 - succinylarginine dihydrolase 2837 46.56 0 3438969..3441485 - 838 157375978 - Ssed_2843 - Ig domain-containing protein 2838 48.89 0 3441702..3443012 + 436 157375979 - Ssed_2844 - sodium:dicarboxylate symporter 2839 46.90 0 3443161..3444465 - 434 157375980 - Ssed_2845 - inosine kinase 2840 46.83 0 3444642..3445649 - 335 157375981 - Ssed_2846 - ferrochelatase 2841 48.99 0 3445828..3446472 - 214 157375982 - Ssed_2847 - nucleoside-triphosphate--adenylate kinase 2842 45.74 0 3446671..3447516 - 281 157375983 - Ssed_2848 - thioredoxin domain-containing protein 2843 46.58 0 3447640..3449556 - 638 157375984 - Ssed_2849 - heat shock protein 90 2844 51.83 +1 3449753..3450352 - 199 157375985 - Ssed_2850 - recombination protein RecR 2845 47.27 0 3450365..3450694 - 109 157375986 - Ssed_2851 - hypothetical protein 2846 48.61 0 3450779..3453646 - 955 157375987 - Ssed_2852 - DNA-directed DNA polymerase 2847 43.42 0 3453756..3454310 - 184 157375988 - Ssed_2853 - adenine phosphoribosyltransferase 2848 43.10 0 3454526..3454945 - 139 157375989 - Ssed_2854 - hypothetical protein 2849 35.83 -2 3455500..3455619 - 39 157375990 - Ssed_2855 - hypothetical protein 2850 41.53 -1 3455780..3456523 - 247 157375991 - Ssed_2856 - hypothetical protein 2851 45.04 0 3456523..3457359 - 278 157375992 - Ssed_2857 - hypothetical protein 2852 50.73 +1 3457533..3458078 - 181 157375993 - Ssed_2858 - hypothetical protein 2853 48.54 0 3458650..3459576 + 308 157375994 - Ssed_2859 - dihydrouridine synthase, DuS 2854 43.70 0 3459794..3460150 + 118 157375995 - Ssed_2860 - TraR/DksA family transcriptional regulator 2855 45.23 0 3460303..3462924 - 873 157375996 - Ssed_2861 - TonB-dependent receptor 2856 46.99 0 3463824..3464255 - 143 157375997 - Ssed_2862 - nucleoside-diphosphate kinase 2857 45.93 0 3464544..3464789 - 81 157375998 - Ssed_2863 - hypothetical protein 2858 42.80 -1 3464986..3466137 - 383 157375999 - Ssed_2864 - two-component response regulator 2859 41.78 -1 3466109..3472750 - 2213 157376000 - Ssed_2865 - Signal transduction histidine kinase-like protein 2860 45.13 0 3473317..3473655 - 112 157376001 - Ssed_2866 - ferredoxin, 2Fe-2S 2861 47.61 0 3473673..3475535 - 620 157376002 - Ssed_2867 - chaperone protein HscA 2862 42.75 -1 3475616..3476146 - 176 157376003 - Ssed_2868 - co-chaperone HscB 2863 42.59 -1 3476166..3476489 - 107 157376004 - Ssed_2869 - iron-sulfur cluster assembly protein IscA 2864 40.62 -1 3476504..3476887 - 127 157376005 - Ssed_2870 - scaffold protein 2865 46.91 0 3476924..3478138 - 404 157376006 - Ssed_2871 - cysteine desulfurase IscS 2866 44.37 0 3478214..3478675 - 153 157376007 - Ssed_2872 - BadM/Rrf2 family transcriptional regulator 2867 49.03 0 3478894..3479715 - 273 157376008 - Ssed_2873 - Serine O-acetyltransferase 2868 46.80 0 3479730..3480494 - 254 157376009 - Ssed_2874 - RNA methyltransferase 2869 44.28 0 3480844..3481647 + 267 157376010 - Ssed_2875 - inositol-phosphate phosphatase 2870 44.23 0 3481832..3483052 + 406 157376011 - Ssed_2876 - NnrS family protein 2871 43.21 0 3483351..3483755 + 134 157376012 - Ssed_2877 - phosphate-starvation-inducible E 2872 41.90 -1 3483907..3484221 + 104 157376013 - Ssed_2878 - type IV pilus assembly PilZ 2873 44.25 0 3484322..3484990 + 222 157376014 - Ssed_2879 - hypothetical protein 2874 39.03 -2 3484977..3485327 + 116 157376015 - Ssed_2880 - RepA domain-containing protein 2875 42.39 -1 3485390..3485632 - 80 157376016 - Ssed_2881 - hypothetical protein 2876 44.72 0 3485795..3487471 + 558 157376017 - Ssed_2882 - signal transduction histidine kinase, LytS 2877 44.02 0 3487468..3488178 + 236 157376018 - Ssed_2883 - putative two-component response-regulatory protein YehT 2878 47.25 0 3488432..3489868 + 478 157376019 - Ssed_2884 - carbon starvation protein CstA 2879 44.26 0 3489956..3490495 - 179 157376020 - Ssed_2885 - YaeQ family protein 2880 46.93 0 3490599..3491510 - 303 157376021 - Ssed_2886 - precorrin-2 oxidase / ferrochelatase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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