version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2726 49.01 0 3300163..3301068 + 301 157375867 - Ssed_2732 - hypothetical protein 2727 44.93 0 3301602..3302834 + 410 157375868 - Ssed_2733 - putative alcohol dehydrogenase 2728 49.20 0 3302987..3304051 - 354 157375869 - Ssed_2734 - hypothetical protein 2729 47.79 0 3304398..3305462 - 354 157375870 - Ssed_2735 - hypothetical protein 2730 52.51 +1 3305833..3307089 - 418 157375871 - Ssed_2736 - ABC transporter permease protein 2731 51.70 +1 3307086..3308348 - 420 157375872 - Ssed_2737 - membrane-fusion protein 2732 51.42 +1 3308345..3309544 - 399 157375873 - Ssed_2738 - membrane-fusion protein 2733 49.03 0 3309541..3310572 - 343 157375874 - Ssed_2739 - multidrug resistance efflux pump-like protein 2734 49.20 0 3310562..3311248 - 228 157375875 - Ssed_2740 - putative macrolide efflux ABC transporter, ATP-binding protein 2735 39.28 -2 3311695..3312081 - 128 157375876 - Ssed_2741 - hypothetical protein 2736 47.02 0 3312239..3312691 - 150 157375877 - Ssed_2742 - hypothetical protein 2737 46.33 0 3312896..3313495 - 199 157375878 - Ssed_2743 - GCN5-related N-acetyltransferase 2738 45.27 0 3313597..3314124 - 175 157375879 - Ssed_2744 - GCN5-related N-acetyltransferase 2739 48.41 0 3314183..3314812 + 209 157375880 - Ssed_2745 - methyl-accepting chemotaxis protein 2740 46.67 0 3314888..3315622 + 244 157375881 - Ssed_2746 - beta-lactamase domain-containing protein 2741 53.92 +1 3315715..3316263 - 182 157375882 - Ssed_2747 - nitroreductase 2742 46.90 0 3316393..3316989 - 198 157375883 - Ssed_2748 - DoxX family protein 2743 47.69 0 3317129..3318166 - 345 157375884 - Ssed_2749 - aminoglycoside phosphotransferase 2744 49.22 0 3318285..3318926 - 213 157375885 - Ssed_2750 - nicotinamide mononucleotide transporter PnuC 2745 46.74 0 3319029..3319289 - 86 157375886 - Ssed_2751 - hypothetical protein 2746 48.67 0 3319397..3321607 - 736 157375887 - Ssed_2752 - TonB-dependent receptor 2747 48.60 0 3321930..3322322 - 130 157375888 - Ssed_2753 - hypothetical protein 2748 47.56 0 3322376..3323380 - 334 157375889 - Ssed_2754 - hypothetical protein 2749 46.22 0 3323397..3323753 - 118 157375890 - Ssed_2755 - histidine triad (HIT) protein 2750 42.27 -1 3324325..3324738 + 137 157375891 - Ssed_2756 - hypothetical protein 2751 41.31 -1 3325128..3325478 - 116 157375892 - Ssed_2757 - hypothetical protein 2752 43.79 0 3325485..3325838 - 117 157375893 - Ssed_2758 - hypothetical protein 2753 45.13 0 3326072..3326707 - 211 157375894 - Ssed_2759 - response regulator receiver protein 2754 45.89 0 3327028..3328206 - 392 157375895 - Ssed_2760 - TPR repeat-containing protein 2755 44.44 0 3328516..3328947 + 143 157375896 - Ssed_2761 - hypothetical protein 2756 47.28 0 3329135..3330955 - 606 157375897 - Ssed_2762 - serine/threonine protein kinase 2757 50.48 +1 3331042..3332511 - 489 157375898 - Ssed_2763 - nitrite transporter 2758 49.11 0 3332512..3332847 - 111 157375899 - Ssed_2764 - nitrite reductase (NAD(P)H), small subunit 2759 50.58 +1 3332844..3335516 - 890 157375900 - Ssed_2765 - nitrite reductase (NAD(P)H), large subunit 2760 46.73 0 3335947..3336543 - 198 157375901 - Ssed_2766 - response regulator 2761 49.53 0 3336616..3337788 - 390 157375902 - Ssed_2767 - glycosyl transferase family protein 2762 52.61 +1 3337785..3338645 - 286 157375903 - Ssed_2768 - uroporphyrin-III C-methyltransferase 2763 48.85 0 3338999..3339346 - 115 157375904 - Ssed_2769 - cytochrome c3 2764 49.88 0 3339740..3340603 - 287 157375905 - Ssed_2770 - heat shock protein HtpX 2765 49.19 0 3340883..3341626 + 247 157375906 - Ssed_2771 - peptidase E 2766 49.47 0 3341698..3343692 - 664 157375907 - Ssed_2772 - putative 5'-nucleotidase 2767 51.69 +1 3344237..3344917 - 226 157375908 - Ssed_2773 - dethiobiotin synthase 2768 48.31 0 3344928..3345728 - 266 157375909 - Ssed_2774 - biotin biosynthesis protein BioC 2769 51.47 +1 3345789..3346979 - 396 157375910 - Ssed_2775 - 8-amino-7-oxononanoate synthase 2770 50.99 +1 3347008..3348072 - 354 157375911 - Ssed_2776 - biotin synthase 2771 53.73 +1 3348183..3349550 + 455 157375912 - Ssed_2777 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2772 50.18 0 3349903..3351261 + 452 157375913 - Ssed_2778 - gluconate transporter 2773 53.00 +1 3351379..3352563 + 394 157375914 - Ssed_2779 - glycerate kinase 2774 49.97 0 3352760..3354412 + 550 157375915 - Ssed_2780 - pyridoxal-dependent decarboxylase 2775 46.93 0 3354562..3354936 - 124 157375916 - Ssed_2781 - hypothetical protein 2776 36.63 -2 3355006..3355248 - 80 157375917 - Ssed_2782 - hypothetical protein 2777 48.72 0 3355479..3357551 + 690 157375918 - Ssed_2783 - methyl-accepting chemotaxisprotein 2778 48.51 0 3357680..3358990 - 436 157375919 - Ssed_2784 - hypothetical protein 2779 51.45 +1 3359111..3359800 - 229 157375920 - Ssed_2785 - helix-turn-helix, type 11 domain-containing protein 2780 47.62 0 3359954..3360394 - 146 157375921 - Ssed_2786 - transcription activator, effector binding 2781 50.00 0 3360453..3360836 - 127 157375922 - Ssed_2787 - glyoxalase family protein 2782 46.67 0 3360960..3362429 - 489 157375923 - Ssed_2788 - hypothetical protein 2783 47.45 0 3362558..3363223 - 221 157375924 - Ssed_2789 - hypothetical protein 2784 52.65 +1 3363468..3364202 + 244 157375925 - Ssed_2790 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 2785 50.68 +1 3364202..3366622 + 806 157375926 - Ssed_2791 - hypothetical protein 2786 46.04 0 3366625..3367230 - 201 157375927 - Ssed_2792 - ribosomal protein N-acetylase-like protein 2787 48.18 0 3367234..3367866 - 210 157375928 - Ssed_2793 - putative chloramphenicol acetyltransferase 2788 44.69 0 3368015..3368560 + 181 157375929 - Ssed_2794 - MerR family transcriptional regulator 2789 43.39 0 3368711..3369247 - 178 157375930 - Ssed_2795 - acetyltransferase 2790 46.58 0 3369703..3376164 - 2153 157375931 - Ssed_2796 - fibronectin type III domain-containing protein 2791 37.83 -2 3376978..3377355 - 125 157375932 - Ssed_2797 - hypothetical protein 2792 51.48 +1 3377584..3379644 - 686 157375933 - Ssed_2798 - aspartate carbamoyltransferase 2793 52.06 +1 3379680..3381884 - 734 157375934 - Ssed_2799 - nitrate reductase 2794 46.43 0 3382164..3382751 + 195 157375935 - Ssed_2800 - ecotin precursor 2795 43.74 0 3383011..3383433 + 140 157375936 - Ssed_2801 - putative lipoprotein 2796 50.39 +1 3383966..3385231 + 421 157375937 - Ssed_2802 - cytosine permease 2797 50.39 +1 3385242..3386537 + 431 157375938 - Ssed_2803 - cytosine deaminase 2798 47.61 0 3386633..3388453 - 606 157375939 - Ssed_2804 - anaerobic ribonucleoside triphosphate reductase 2799 44.81 0 3388466..3388918 - 150 157375940 - Ssed_2805 - hypothetical protein 2800 51.22 +1 3389301..3389792 + 163 157375941 - Ssed_2806 - GCN5-related N-acetyltransferase 2801 47.15 0 3389880..3390125 + 81 157375942 - Ssed_2807 - hypothetical protein 2802 53.46 +1 3390194..3390685 - 163 157375943 - Ssed_2808 - hypothetical protein 2803 49.42 0 3390685..3391461 - 258 157375944 - Ssed_2809 - NAD-dependent deacetylase 2804 45.14 0 3392046..3392477 + 143 157375945 - Ssed_2810 - ferric uptake regulator 2805 46.51 0 3392632..3393504 - 290 157375946 - Ssed_2811 - succinyl-CoA synthetase, alpha subunit 2806 45.84 0 3393504..3394670 - 388 157375947 - Ssed_2812 - succinyl-CoA synthetase subunit beta 2807 48.06 0 3394784..3395971 - 395 157375948 - Ssed_2813 - 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase 2808 47.89 0 3396001..3398823 - 940 157375949 - Ssed_2814 - alpha-ketoglutarate decarboxylase 2809 43.08 0 3399003..3399710 - 235 157375950 - Ssed_2815 - succinate dehydrogenase iron-sulfur subunit 2810 49.58 0 3399721..3401487 - 588 157375951 - Ssed_2816 - succinate dehydrogenase flavoprotein subunit 2811 46.84 0 3401488..3401835 - 115 157375952 - Ssed_2817 - putative succinate dehydrogenase, hydrophobic subunit 2812 45.33 0 3401829..3402203 - 124 157375953 - Ssed_2818 - succinate dehydrogenase, cytochrome b subunit 2813 46.08 0 3402633..3403919 + 428 157375954 - Ssed_2819 - type II citrate synthase 2814 47.25 0 3404485..3405576 + 363 157375955 - Ssed_2820 - RND family efflux transporter MFP subunit 2815 49.17 0 3405590..3408853 + 1087 157375956 - Ssed_2821 - acriflavin resistance protein 2816 49.81 0 3408850..3411933 + 1027 157375957 - Ssed_2822 - acriflavin resistance protein 2817 47.57 0 3412072..3412935 + 287 157375958 - Ssed_2823 - beta-lactamase domain-containing protein 2818 42.62 -1 3413044..3413226 - 60 157375959 - Ssed_2824 - hypothetical protein 2819 46.35 0 3413259..3414272 - 337 157375960 - Ssed_2825 - tetraacyldisaccharide 4'-kinase 2820 47.16 0 3414273..3416087 - 604 157375961 - Ssed_2826 - ABC transporter, ATP-binding protein MsbA 2821 46.31 0 3416120..3418423 - 767 157375962 - Ssed_2827 - DNA internalization-related competence protein ComEC/Rec2 2822 45.21 0 3418482..3418961 + 159 157375963 - Ssed_2828 - hypothetical protein 2823 47.30 0 3419126..3420385 - 419 157375964 - Ssed_2829 - LolC/E family lipoprotein releasing system, transmembrane protein 2824 50.43 +1 3420382..3421077 - 231 157375965 - Ssed_2830 - lipoprotein releasing system, ATP-binding protein 2825 47.16 0 3421203..3422453 - 416 157375966 - Ssed_2831 - LolC/E family lipoprotein releasing system, transmembrane protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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