version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2688 45.46 0 3254311..3256446 + 711 157375829 - Ssed_2694 - phosphatase/nucleotidase 2689 46.90 0 3256489..3257793 + 434 157375830 - Ssed_2695 - hypothetical protein 2690 49.75 0 3257943..3259733 - 596 157375831 - Ssed_2696 - acyl-CoA dehydrogenase domain-containing protein 2691 50.65 +1 3260001..3260849 + 282 157375832 - Ssed_2697 - aldose 1-epimerase 2692 47.93 0 3261389..3265006 + 1205 157375833 - Ssed_2698 - hypothetical protein 2693 42.29 -1 3265185..3265385 + 66 157375834 - Ssed_2699 - hypothetical protein 2694 46.73 0 3265413..3265733 + 106 157375835 - Ssed_2700 - hypothetical protein 2695 51.31 +1 3266051..3267352 + 433 157375836 - Ssed_2701 - anaerobic C4-dicarboxylate transporter 2696 49.41 0 3267500..3267922 - 140 157375837 - Ssed_2702 - GCN5-related N-acetyltransferase 2697 45.93 0 3268033..3268548 - 171 157375838 - Ssed_2703 - hypothetical protein 2698 44.20 0 3269034..3269972 + 312 157375839 - Ssed_2704 - initiation factor 2B related 2699 41.00 -1 3270042..3270902 - 286 157375840 - Ssed_2705 - regulatory protein, LysR 2700 42.44 -1 3271038..3272135 - 365 157375841 - Ssed_2706 - hypothetical protein 2701 44.96 0 3272230..3273459 - 409 157375842 - Ssed_2707 - NADH:flavin oxidoreductase 2702 44.28 0 3273480..3273890 - 136 157375843 - Ssed_2708 - cytochrome c3 2703 41.93 -1 3274550..3274933 + 127 157375844 - Ssed_2709 - lactoylglutathione lyase 2704 47.96 0 3274951..3276051 + 366 157375845 - Ssed_2710 - NADH:flavin oxidoreductase/NADH oxidase 2705 44.08 0 3276264..3277166 + 300 157375846 - Ssed_2711 - hypothetical protein 2706 42.84 -1 3277498..3278970 - 490 157375847 - Ssed_2712 - RNA-directed DNA polymerase 2707 38.89 -2 3279644..3280129 - 161 157375848 - Ssed_2713 - putative lactoylglutathione lyase 2708 34.43 -2 3280216..3280398 - 60 157375849 - Ssed_2714 - hypothetical protein 2709 45.39 0 3280723..3281742 + 339 157375850 - Ssed_2715 - adenosine deaminase 2710 42.75 -1 3282089..3282502 - 137 157375851 - Ssed_2716 - MutT/NUDIX family protein 2711 39.04 -2 3282624..3283061 - 145 157375852 - Ssed_2717 - acetyltransferase 2712 42.25 -1 3283252..3283464 - 70 157375853 - Ssed_2718 - hypothetical protein 2713 41.53 -1 3283759..3284502 + 247 157375854 - Ssed_2719 - hypothetical protein 2714 42.30 -1 3284507..3285778 - 423 157375855 - Ssed_2720 - sensor histidine kinase 2715 43.87 0 3285768..3286469 - 233 157375856 - Ssed_2721 - DNA-binding response regulator 2716 42.39 -1 3286589..3287725 - 378 157375857 - Ssed_2722 - putative intracellular protease/amidase-like protein 2717 45.61 0 3287790..3290273 - 827 157375858 - Ssed_2723 - putative permease 2718 43.22 0 3290273..3290950 - 225 157375859 - Ssed_2724 - ABC transporter, ATP-binding protein 2719 33.33 -2 3291213..3291671 - 152 157375860 - Ssed_2725 - hypothetical protein 2720 42.77 -1 3291996..3292154 - 52 157375861 - Ssed_2726 - hypothetical protein 2721 38.54 -2 3292248..3294071 - 607 157375862 - Ssed_2727 - ATP-dependent OLD family endonuclease 2722 50.65 +1 3294791..3295483 - 230 157375863 - Ssed_2728 - hypothetical protein 2723 48.58 0 3295599..3296162 - 187 157375864 - Ssed_2729 - phosphodiesterase 2724 46.64 0 3296284..3297891 - 535 157375865 - Ssed_2730 - sigma-54 dependent trancsriptional regulator 2725 44.49 0 3298578..3300101 + 507 157375866 - Ssed_2731 - putative flavoprotein subunit of a reductase 2726 49.01 0 3300163..3301068 + 301 157375867 - Ssed_2732 - hypothetical protein 2727 44.93 0 3301602..3302834 + 410 157375868 - Ssed_2733 - putative alcohol dehydrogenase 2728 49.20 0 3302987..3304051 - 354 157375869 - Ssed_2734 - hypothetical protein 2729 47.79 0 3304398..3305462 - 354 157375870 - Ssed_2735 - hypothetical protein 2730 52.51 +1 3305833..3307089 - 418 157375871 - Ssed_2736 - ABC transporter permease protein 2731 51.70 +1 3307086..3308348 - 420 157375872 - Ssed_2737 - membrane-fusion protein 2732 51.42 +1 3308345..3309544 - 399 157375873 - Ssed_2738 - membrane-fusion protein 2733 49.03 0 3309541..3310572 - 343 157375874 - Ssed_2739 - multidrug resistance efflux pump-like protein 2734 49.20 0 3310562..3311248 - 228 157375875 - Ssed_2740 - putative macrolide efflux ABC transporter, ATP-binding protein 2735 39.28 -2 3311695..3312081 - 128 157375876 - Ssed_2741 - hypothetical protein 2736 47.02 0 3312239..3312691 - 150 157375877 - Ssed_2742 - hypothetical protein 2737 46.33 0 3312896..3313495 - 199 157375878 - Ssed_2743 - GCN5-related N-acetyltransferase 2738 45.27 0 3313597..3314124 - 175 157375879 - Ssed_2744 - GCN5-related N-acetyltransferase 2739 48.41 0 3314183..3314812 + 209 157375880 - Ssed_2745 - methyl-accepting chemotaxis protein 2740 46.67 0 3314888..3315622 + 244 157375881 - Ssed_2746 - beta-lactamase domain-containing protein 2741 53.92 +1 3315715..3316263 - 182 157375882 - Ssed_2747 - nitroreductase 2742 46.90 0 3316393..3316989 - 198 157375883 - Ssed_2748 - DoxX family protein 2743 47.69 0 3317129..3318166 - 345 157375884 - Ssed_2749 - aminoglycoside phosphotransferase 2744 49.22 0 3318285..3318926 - 213 157375885 - Ssed_2750 - nicotinamide mononucleotide transporter PnuC 2745 46.74 0 3319029..3319289 - 86 157375886 - Ssed_2751 - hypothetical protein 2746 48.67 0 3319397..3321607 - 736 157375887 - Ssed_2752 - TonB-dependent receptor 2747 48.60 0 3321930..3322322 - 130 157375888 - Ssed_2753 - hypothetical protein 2748 47.56 0 3322376..3323380 - 334 157375889 - Ssed_2754 - hypothetical protein 2749 46.22 0 3323397..3323753 - 118 157375890 - Ssed_2755 - histidine triad (HIT) protein 2750 42.27 -1 3324325..3324738 + 137 157375891 - Ssed_2756 - hypothetical protein 2751 41.31 -1 3325128..3325478 - 116 157375892 - Ssed_2757 - hypothetical protein 2752 43.79 0 3325485..3325838 - 117 157375893 - Ssed_2758 - hypothetical protein 2753 45.13 0 3326072..3326707 - 211 157375894 - Ssed_2759 - response regulator receiver protein 2754 45.89 0 3327028..3328206 - 392 157375895 - Ssed_2760 - TPR repeat-containing protein 2755 44.44 0 3328516..3328947 + 143 157375896 - Ssed_2761 - hypothetical protein 2756 47.28 0 3329135..3330955 - 606 157375897 - Ssed_2762 - serine/threonine protein kinase 2757 50.48 +1 3331042..3332511 - 489 157375898 - Ssed_2763 - nitrite transporter 2758 49.11 0 3332512..3332847 - 111 157375899 - Ssed_2764 - nitrite reductase (NAD(P)H), small subunit 2759 50.58 +1 3332844..3335516 - 890 157375900 - Ssed_2765 - nitrite reductase (NAD(P)H), large subunit 2760 46.73 0 3335947..3336543 - 198 157375901 - Ssed_2766 - response regulator 2761 49.53 0 3336616..3337788 - 390 157375902 - Ssed_2767 - glycosyl transferase family protein 2762 52.61 +1 3337785..3338645 - 286 157375903 - Ssed_2768 - uroporphyrin-III C-methyltransferase 2763 48.85 0 3338999..3339346 - 115 157375904 - Ssed_2769 - cytochrome c3 2764 49.88 0 3339740..3340603 - 287 157375905 - Ssed_2770 - heat shock protein HtpX 2765 49.19 0 3340883..3341626 + 247 157375906 - Ssed_2771 - peptidase E 2766 49.47 0 3341698..3343692 - 664 157375907 - Ssed_2772 - putative 5'-nucleotidase 2767 51.69 +1 3344237..3344917 - 226 157375908 - Ssed_2773 - dethiobiotin synthase 2768 48.31 0 3344928..3345728 - 266 157375909 - Ssed_2774 - biotin biosynthesis protein BioC 2769 51.47 +1 3345789..3346979 - 396 157375910 - Ssed_2775 - 8-amino-7-oxononanoate synthase 2770 50.99 +1 3347008..3348072 - 354 157375911 - Ssed_2776 - biotin synthase 2771 53.73 +1 3348183..3349550 + 455 157375912 - Ssed_2777 - adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2772 50.18 0 3349903..3351261 + 452 157375913 - Ssed_2778 - gluconate transporter 2773 53.00 +1 3351379..3352563 + 394 157375914 - Ssed_2779 - glycerate kinase 2774 49.97 0 3352760..3354412 + 550 157375915 - Ssed_2780 - pyridoxal-dependent decarboxylase 2775 46.93 0 3354562..3354936 - 124 157375916 - Ssed_2781 - hypothetical protein 2776 36.63 -2 3355006..3355248 - 80 157375917 - Ssed_2782 - hypothetical protein 2777 48.72 0 3355479..3357551 + 690 157375918 - Ssed_2783 - methyl-accepting chemotaxisprotein 2778 48.51 0 3357680..3358990 - 436 157375919 - Ssed_2784 - hypothetical protein 2779 51.45 +1 3359111..3359800 - 229 157375920 - Ssed_2785 - helix-turn-helix, type 11 domain-containing protein 2780 47.62 0 3359954..3360394 - 146 157375921 - Ssed_2786 - transcription activator, effector binding 2781 50.00 0 3360453..3360836 - 127 157375922 - Ssed_2787 - glyoxalase family protein 2782 46.67 0 3360960..3362429 - 489 157375923 - Ssed_2788 - hypothetical protein 2783 47.45 0 3362558..3363223 - 221 157375924 - Ssed_2789 - hypothetical protein 2784 52.65 +1 3363468..3364202 + 244 157375925 - Ssed_2790 - protein-L-isoaspartate(D-aspartate) O-methyltransferase 2785 50.68 +1 3364202..3366622 + 806 157375926 - Ssed_2791 - hypothetical protein 2786 46.04 0 3366625..3367230 - 201 157375927 - Ssed_2792 - ribosomal protein N-acetylase-like protein 2787 48.18 0 3367234..3367866 - 210 157375928 - Ssed_2793 - putative chloramphenicol acetyltransferase 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0