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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2655 46.67 0 3218127..3218786 + 219 157375796 - Ssed_2661 - glutathione S-transferase domain-containing protein 2656 44.31 0 3218884..3219840 + 318 157375797 - Ssed_2662 - hypothetical protein 2657 47.42 0 3219837..3220340 + 167 157375798 - Ssed_2663 - hypothetical protein 2658 42.81 -1 3220467..3221099 + 210 157375799 - Ssed_2664 - methyltransferase type 11 2659 48.41 0 3221481..3222707 + 408 157375800 - Ssed_2665 - Bcr/CflA subfamily drug resistance transporter 2660 47.97 0 3223270..3224991 + 573 157375801 - Ssed_2666 - acetolactate synthase 3 catalytic subunit 2661 48.28 0 3224991..3225485 + 164 157375802 - Ssed_2667 - acetolactate synthase 3 regulatory subunit 2662 45.95 0 3225605..3226048 - 147 157375803 - Ssed_2668 - heat shock protein HSP20 2663 46.08 0 3226352..3228061 - 569 157375804 - Ssed_2669 - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 2664 48.81 0 3228427..3229098 - 223 157375805 - Ssed_2670 - carboxylesterase 2665 46.55 0 3229267..3230280 + 337 157375806 - Ssed_2671 - glutathione S-transferase domain-containing protein 2666 47.75 0 3230353..3230574 - 73 157375807 - Ssed_2672 - hypothetical protein 2667 47.41 0 3230661..3231143 - 160 157375808 - Ssed_2673 - peptidylprolyl isomerase, FKBP-type 2668 46.62 0 3231227..3232099 - 290 157375809 - Ssed_2674 - hypothetical protein 2669 48.41 0 3232271..3233404 - 377 157375810 - Ssed_2675 - lytic murein transglycosylase 2670 43.61 0 3233713..3234072 + 119 157375811 - Ssed_2676 - hypothetical protein 2671 47.00 0 3234190..3234855 + 221 157375812 - Ssed_2677 - hypothetical protein 2672 42.71 -1 3234891..3235829 - 312 157375813 - Ssed_2678 - response regulator receiver modulated CheW protein 2673 37.36 -2 3236818..3236991 + 57 157375814 - Ssed_2679 - hypothetical protein 2674 44.70 0 3237320..3238243 - 307 157375815 - Ssed_2680 - hypothetical protein 2675 43.87 0 3238446..3238853 + 135 157375816 - Ssed_2681 - hypothetical protein 2676 46.61 0 3238913..3239620 - 235 157375817 - Ssed_2682 - ABC transporter 2677 47.22 0 3239834..3240085 + 83 157375818 - Ssed_2683 - integral membrane protein TerC 2678 47.33 0 3240316..3241308 + 330 157375819 - Ssed_2684 - cytochrome-c peroxidase 2679 41.46 -1 3241402..3241758 - 118 157375820 - Ssed_2685 - hypothetical protein 2680 45.97 0 3242185..3243078 - 297 157375821 - Ssed_2686 - LysR family transcriptional regulator 2681 45.82 0 3243301..3244341 + 346 157375822 - Ssed_2687 - 4-hydroxyphenylpyruvate dioxygenase 2682 51.78 +1 3244470..3245087 + 205 157375823 - Ssed_2688 - lysine exporter protein (LysE/YggA) 2683 52.32 +1 3245349..3247097 + 582 157375824 - Ssed_2689 - gamma-glutamyltransferase 2684 49.21 0 3247167..3248741 - 524 157375825 - Ssed_2690 - methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor 2685 46.17 0 3249030..3250634 - 534 157375826 - Ssed_2691 - hypothetical protein 2686 46.13 0 3250824..3253004 + 726 157375827 - Ssed_2692 - peptidyl-dipeptidase Dcp 2687 44.22 0 3253121..3253726 + 201 157375828 - Ssed_2693 - hypothetical protein 2688 45.46 0 3254311..3256446 + 711 157375829 - Ssed_2694 - phosphatase/nucleotidase 2689 46.90 0 3256489..3257793 + 434 157375830 - Ssed_2695 - hypothetical protein 2690 49.75 0 3257943..3259733 - 596 157375831 - Ssed_2696 - acyl-CoA dehydrogenase domain-containing protein 2691 50.65 +1 3260001..3260849 + 282 157375832 - Ssed_2697 - aldose 1-epimerase 2692 47.93 0 3261389..3265006 + 1205 157375833 - Ssed_2698 - hypothetical protein 2693 42.29 -1 3265185..3265385 + 66 157375834 - Ssed_2699 - hypothetical protein 2694 46.73 0 3265413..3265733 + 106 157375835 - Ssed_2700 - hypothetical protein 2695 51.31 +1 3266051..3267352 + 433 157375836 - Ssed_2701 - anaerobic C4-dicarboxylate transporter 2696 49.41 0 3267500..3267922 - 140 157375837 - Ssed_2702 - GCN5-related N-acetyltransferase 2697 45.93 0 3268033..3268548 - 171 157375838 - Ssed_2703 - hypothetical protein 2698 44.20 0 3269034..3269972 + 312 157375839 - Ssed_2704 - initiation factor 2B related 2699 41.00 -1 3270042..3270902 - 286 157375840 - Ssed_2705 - regulatory protein, LysR 2700 42.44 -1 3271038..3272135 - 365 157375841 - Ssed_2706 - hypothetical protein 2701 44.96 0 3272230..3273459 - 409 157375842 - Ssed_2707 - NADH:flavin oxidoreductase 2702 44.28 0 3273480..3273890 - 136 157375843 - Ssed_2708 - cytochrome c3 2703 41.93 -1 3274550..3274933 + 127 157375844 - Ssed_2709 - lactoylglutathione lyase 2704 47.96 0 3274951..3276051 + 366 157375845 - Ssed_2710 - NADH:flavin oxidoreductase/NADH oxidase 2705 44.08 0 3276264..3277166 + 300 157375846 - Ssed_2711 - hypothetical protein 2706 42.84 -1 3277498..3278970 - 490 157375847 - Ssed_2712 - RNA-directed DNA polymerase 2707 38.89 -2 3279644..3280129 - 161 157375848 - Ssed_2713 - putative lactoylglutathione lyase 2708 34.43 -2 3280216..3280398 - 60 157375849 - Ssed_2714 - hypothetical protein 2709 45.39 0 3280723..3281742 + 339 157375850 - Ssed_2715 - adenosine deaminase 2710 42.75 -1 3282089..3282502 - 137 157375851 - Ssed_2716 - MutT/NUDIX family protein 2711 39.04 -2 3282624..3283061 - 145 157375852 - Ssed_2717 - acetyltransferase 2712 42.25 -1 3283252..3283464 - 70 157375853 - Ssed_2718 - hypothetical protein 2713 41.53 -1 3283759..3284502 + 247 157375854 - Ssed_2719 - hypothetical protein 2714 42.30 -1 3284507..3285778 - 423 157375855 - Ssed_2720 - sensor histidine kinase 2715 43.87 0 3285768..3286469 - 233 157375856 - Ssed_2721 - DNA-binding response regulator 2716 42.39 -1 3286589..3287725 - 378 157375857 - Ssed_2722 - putative intracellular protease/amidase-like protein 2717 45.61 0 3287790..3290273 - 827 157375858 - Ssed_2723 - putative permease 2718 43.22 0 3290273..3290950 - 225 157375859 - Ssed_2724 - ABC transporter, ATP-binding protein 2719 33.33 -2 3291213..3291671 - 152 157375860 - Ssed_2725 - hypothetical protein 2720 42.77 -1 3291996..3292154 - 52 157375861 - Ssed_2726 - hypothetical protein 2721 38.54 -2 3292248..3294071 - 607 157375862 - Ssed_2727 - ATP-dependent OLD family endonuclease 2722 50.65 +1 3294791..3295483 - 230 157375863 - Ssed_2728 - hypothetical protein 2723 48.58 0 3295599..3296162 - 187 157375864 - Ssed_2729 - phosphodiesterase 2724 46.64 0 3296284..3297891 - 535 157375865 - Ssed_2730 - sigma-54 dependent trancsriptional regulator 2725 44.49 0 3298578..3300101 + 507 157375866 - Ssed_2731 - putative flavoprotein subunit of a reductase 2726 49.01 0 3300163..3301068 + 301 157375867 - Ssed_2732 - hypothetical protein 2727 44.93 0 3301602..3302834 + 410 157375868 - Ssed_2733 - putative alcohol dehydrogenase 2728 49.20 0 3302987..3304051 - 354 157375869 - Ssed_2734 - hypothetical protein 2729 47.79 0 3304398..3305462 - 354 157375870 - Ssed_2735 - hypothetical protein 2730 52.51 +1 3305833..3307089 - 418 157375871 - Ssed_2736 - ABC transporter permease protein 2731 51.70 +1 3307086..3308348 - 420 157375872 - Ssed_2737 - membrane-fusion protein 2732 51.42 +1 3308345..3309544 - 399 157375873 - Ssed_2738 - membrane-fusion protein 2733 49.03 0 3309541..3310572 - 343 157375874 - Ssed_2739 - multidrug resistance efflux pump-like protein 2734 49.20 0 3310562..3311248 - 228 157375875 - Ssed_2740 - putative macrolide efflux ABC transporter, ATP-binding protein 2735 39.28 -2 3311695..3312081 - 128 157375876 - Ssed_2741 - hypothetical protein 2736 47.02 0 3312239..3312691 - 150 157375877 - Ssed_2742 - hypothetical protein 2737 46.33 0 3312896..3313495 - 199 157375878 - Ssed_2743 - GCN5-related N-acetyltransferase 2738 45.27 0 3313597..3314124 - 175 157375879 - Ssed_2744 - GCN5-related N-acetyltransferase 2739 48.41 0 3314183..3314812 + 209 157375880 - Ssed_2745 - methyl-accepting chemotaxis protein 2740 46.67 0 3314888..3315622 + 244 157375881 - Ssed_2746 - beta-lactamase domain-containing protein 2741 53.92 +1 3315715..3316263 - 182 157375882 - Ssed_2747 - nitroreductase 2742 46.90 0 3316393..3316989 - 198 157375883 - Ssed_2748 - DoxX family protein 2743 47.69 0 3317129..3318166 - 345 157375884 - Ssed_2749 - aminoglycoside phosphotransferase 2744 49.22 0 3318285..3318926 - 213 157375885 - Ssed_2750 - nicotinamide mononucleotide transporter PnuC 2745 46.74 0 3319029..3319289 - 86 157375886 - Ssed_2751 - hypothetical protein 2746 48.67 0 3319397..3321607 - 736 157375887 - Ssed_2752 - TonB-dependent receptor 2747 48.60 0 3321930..3322322 - 130 157375888 - Ssed_2753 - hypothetical protein 2748 47.56 0 3322376..3323380 - 334 157375889 - Ssed_2754 - hypothetical protein 2749 46.22 0 3323397..3323753 - 118 157375890 - Ssed_2755 - histidine triad (HIT) protein 2750 42.27 -1 3324325..3324738 + 137 157375891 - Ssed_2756 - hypothetical protein 2751 41.31 -1 3325128..3325478 - 116 157375892 - Ssed_2757 - hypothetical protein 2752 43.79 0 3325485..3325838 - 117 157375893 - Ssed_2758 - hypothetical protein 2753 45.13 0 3326072..3326707 - 211 157375894 - Ssed_2759 - response regulator receiver protein 2754 45.89 0 3327028..3328206 - 392 157375895 - Ssed_2760 - TPR repeat-containing protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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