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Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2598 41.18 -1 3156805..3157161 - 118 157375739 - Ssed_2604 - hypothetical protein 2599 42.19 -1 3157292..3157867 - 191 157375740 - Ssed_2605 - YceI family protein 2600 47.98 0 3158305..3158946 - 213 157375741 - Ssed_2606 - pyridoxal 5'-phosphate synthase 2601 49.62 0 3159010..3159930 - 306 157375742 - Ssed_2607 - agmatinase 2602 43.98 0 3159961..3160890 - 309 157375743 - Ssed_2608 - adenosylmethionine decarboxylase 2603 46.19 0 3160941..3162854 - 637 157375744 - Ssed_2609 - arginine decarboxylase 2604 43.29 0 3163286..3164119 + 277 157375745 - Ssed_2610 - hypothetical protein 2605 47.60 0 3164260..3164925 + 221 157375746 - Ssed_2611 - hypothetical protein 2606 46.95 0 3165113..3165949 + 278 157375747 - Ssed_2612 - hypothetical protein 2607 46.33 0 3165946..3166845 + 299 157375748 - Ssed_2613 - ABC transporter-related protein 2608 42.03 -1 3167275..3167481 - 68 157375749 - Ssed_2614 - cold-shock DNA-binding domain-containing protein 2609 42.52 -1 3167782..3168597 - 271 157375750 - Ssed_2615 - 23S rRNA methyltransferase A 2610 44.65 0 3168618..3169439 - 273 157375751 - Ssed_2616 - hypothetical protein 2611 45.65 0 3169751..3171163 + 470 157375752 - Ssed_2617 - exonuclease I 2612 49.94 0 3171260..3172150 + 296 157375753 - Ssed_2618 - cytidine deaminase 2613 51.60 +1 3172222..3173097 - 291 157375754 - Ssed_2619 - 6-phosphogluconate dehydrogenase, NAD-binding 2614 51.55 +1 3173214..3173696 - 160 157375755 - Ssed_2620 - cytosolic long-chain acyl-CoA thioester hydrolase family protein 2615 46.34 0 3173793..3174161 - 122 157375756 - Ssed_2621 - hypothetical protein 2616 48.45 0 3174446..3175702 - 418 157375757 - Ssed_2622 - 3-oxoacyl-(acyl-carrier-protein) synthase II 2617 42.31 -1 3175910..3176143 - 77 157375758 - Ssed_2623 - acyl carrier protein 2618 44.58 0 3176303..3177049 - 248 157375759 - Ssed_2624 - 3-oxoacyl-(acyl-carrier-protein) reductase 2619 47.10 0 3177059..3177988 - 309 157375760 - Ssed_2625 - malonyl CoA-acyl carrier protein transacylase 2620 48.85 0 3178039..3178998 - 319 157375761 - Ssed_2626 - 3-oxoacyl-(acyl carrier protein) synthase III 2621 43.93 0 3179010..3180038 - 342 157375762 - Ssed_2627 - putative glycerol-3-phosphate acyltransferase PlsX 2622 43.86 0 3180054..3180224 - 56 157375763 - Ssed_2628 - ribosomal protein L32 2623 44.95 0 3180242..3180766 - 174 157375764 - Ssed_2629 - hypothetical protein 2624 44.16 0 3181104..3181694 + 196 157375765 - Ssed_2630 - maf protein 2625 45.66 0 3181823..3183226 + 467 157375766 - Ssed_2631 - diguanylate cyclase with PAS/PAC sensor 2626 44.85 0 3183337..3183987 - 216 157375767 - Ssed_2632 - HAD family hydrolase 2627 45.30 0 3183984..3184961 - 325 157375768 - Ssed_2633 - lysozyme 2628 48.47 0 3185535..3189140 + 1201 157375769 - Ssed_2634 - ribonuclease 2629 46.05 0 3189273..3190829 + 518 157375770 - Ssed_2635 - sulphate transporter 2630 46.80 0 3190899..3191804 - 301 157375771 - Ssed_2636 - bifunctional methionine sulfoxide reductase B/A protein 2631 45.70 0 3192091..3192963 + 290 157375772 - Ssed_2637 - 2OG-Fe(II) oxygenase 2632 47.71 0 3193154..3194092 + 312 157375773 - Ssed_2638 - ribosomal biogenesis GTPase 2633 46.34 0 3194284..3195129 - 281 157375774 - Ssed_2639 - DNA ligase 2634 46.51 0 3195447..3195818 + 123 157375775 - Ssed_2640 - diacylglycerol kinase 2635 40.48 -1 3196098..3196979 + 293 157375776 - Ssed_2641 - hypothetical protein 2636 45.29 0 3197324..3197758 + 144 157375777 - Ssed_2642 - hypothetical protein 2637 49.23 0 3197825..3199051 - 408 157375778 - Ssed_2643 - nucleoside recognition domain-containing protein 2638 47.53 0 3199274..3200710 + 478 157375779 - Ssed_2644 - rRNA (cytosine-C(5)-)-methyltransferase RsmF 2639 46.77 0 3200913..3201701 - 262 157375780 - Ssed_2645 - TatD family hydrolase 2640 48.62 0 3201814..3202140 - 108 157375781 - Ssed_2646 - type IV pilus assembly PilZ 2641 45.14 0 3202148..3203062 - 304 157375782 - Ssed_2647 - DNA-directed DNA polymerase 2642 50.87 +1 3203062..3203694 - 210 157375783 - Ssed_2648 - dTMP kinase 2643 46.63 0 3203691..3204698 - 335 157375784 - Ssed_2649 - aminodeoxychorismate lyase 2644 48.41 0 3204695..3205510 - 271 157375785 - Ssed_2650 - aminotransferase, class IV 2645 46.23 0 3205764..3206399 - 211 157375786 - Ssed_2651 - uridine kinase 2646 49.19 0 3206412..3207527 - 371 157375787 - Ssed_2652 - ATP-binding Mrp/Nbp35 family protein 2647 48.29 0 3207689..3209767 + 692 157375788 - Ssed_2653 - methionyl-tRNA synthetase 2648 44.19 0 3209934..3211517 - 527 157375789 - Ssed_2654 - hypothetical protein 2649 48.50 0 3211776..3212276 - 166 157375790 - Ssed_2655 - CreA family protein 2650 48.77 0 3212276..3213655 - 459 157375791 - Ssed_2656 - putative chaperone 2651 47.65 0 3213832..3214341 - 169 157375792 - Ssed_2657 - YbaK/prolyl-tRNA synthetase associated region 2652 49.20 0 3214488..3215993 + 501 157375793 - Ssed_2658 - hypothetical protein 2653 45.82 0 3215974..3216774 + 266 157375794 - Ssed_2659 - band 7 protein 2654 46.38 0 3216929..3217909 - 326 157375795 - Ssed_2660 - rhodanese domain-containing protein 2655 46.67 0 3218127..3218786 + 219 157375796 - Ssed_2661 - glutathione S-transferase domain-containing protein 2656 44.31 0 3218884..3219840 + 318 157375797 - Ssed_2662 - hypothetical protein 2657 47.42 0 3219837..3220340 + 167 157375798 - Ssed_2663 - hypothetical protein 2658 42.81 -1 3220467..3221099 + 210 157375799 - Ssed_2664 - methyltransferase type 11 2659 48.41 0 3221481..3222707 + 408 157375800 - Ssed_2665 - Bcr/CflA subfamily drug resistance transporter 2660 47.97 0 3223270..3224991 + 573 157375801 - Ssed_2666 - acetolactate synthase 3 catalytic subunit 2661 48.28 0 3224991..3225485 + 164 157375802 - Ssed_2667 - acetolactate synthase 3 regulatory subunit 2662 45.95 0 3225605..3226048 - 147 157375803 - Ssed_2668 - heat shock protein HSP20 2663 46.08 0 3226352..3228061 - 569 157375804 - Ssed_2669 - bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor 2664 48.81 0 3228427..3229098 - 223 157375805 - Ssed_2670 - carboxylesterase 2665 46.55 0 3229267..3230280 + 337 157375806 - Ssed_2671 - glutathione S-transferase domain-containing protein 2666 47.75 0 3230353..3230574 - 73 157375807 - Ssed_2672 - hypothetical protein 2667 47.41 0 3230661..3231143 - 160 157375808 - Ssed_2673 - peptidylprolyl isomerase, FKBP-type 2668 46.62 0 3231227..3232099 - 290 157375809 - Ssed_2674 - hypothetical protein 2669 48.41 0 3232271..3233404 - 377 157375810 - Ssed_2675 - lytic murein transglycosylase 2670 43.61 0 3233713..3234072 + 119 157375811 - Ssed_2676 - hypothetical protein 2671 47.00 0 3234190..3234855 + 221 157375812 - Ssed_2677 - hypothetical protein 2672 42.71 -1 3234891..3235829 - 312 157375813 - Ssed_2678 - response regulator receiver modulated CheW protein 2673 37.36 -2 3236818..3236991 + 57 157375814 - Ssed_2679 - hypothetical protein 2674 44.70 0 3237320..3238243 - 307 157375815 - Ssed_2680 - hypothetical protein 2675 43.87 0 3238446..3238853 + 135 157375816 - Ssed_2681 - hypothetical protein 2676 46.61 0 3238913..3239620 - 235 157375817 - Ssed_2682 - ABC transporter 2677 47.22 0 3239834..3240085 + 83 157375818 - Ssed_2683 - integral membrane protein TerC 2678 47.33 0 3240316..3241308 + 330 157375819 - Ssed_2684 - cytochrome-c peroxidase 2679 41.46 -1 3241402..3241758 - 118 157375820 - Ssed_2685 - hypothetical protein 2680 45.97 0 3242185..3243078 - 297 157375821 - Ssed_2686 - LysR family transcriptional regulator 2681 45.82 0 3243301..3244341 + 346 157375822 - Ssed_2687 - 4-hydroxyphenylpyruvate dioxygenase 2682 51.78 +1 3244470..3245087 + 205 157375823 - Ssed_2688 - lysine exporter protein (LysE/YggA) 2683 52.32 +1 3245349..3247097 + 582 157375824 - Ssed_2689 - gamma-glutamyltransferase 2684 49.21 0 3247167..3248741 - 524 157375825 - Ssed_2690 - methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor 2685 46.17 0 3249030..3250634 - 534 157375826 - Ssed_2691 - hypothetical protein 2686 46.13 0 3250824..3253004 + 726 157375827 - Ssed_2692 - peptidyl-dipeptidase Dcp 2687 44.22 0 3253121..3253726 + 201 157375828 - Ssed_2693 - hypothetical protein 2688 45.46 0 3254311..3256446 + 711 157375829 - Ssed_2694 - phosphatase/nucleotidase 2689 46.90 0 3256489..3257793 + 434 157375830 - Ssed_2695 - hypothetical protein 2690 49.75 0 3257943..3259733 - 596 157375831 - Ssed_2696 - acyl-CoA dehydrogenase domain-containing protein 2691 50.65 +1 3260001..3260849 + 282 157375832 - Ssed_2697 - aldose 1-epimerase 2692 47.93 0 3261389..3265006 + 1205 157375833 - Ssed_2698 - hypothetical protein 2693 42.29 -1 3265185..3265385 + 66 157375834 - Ssed_2699 - hypothetical protein 2694 46.73 0 3265413..3265733 + 106 157375835 - Ssed_2700 - hypothetical protein 2695 51.31 +1 3266051..3267352 + 433 157375836 - Ssed_2701 - anaerobic C4-dicarboxylate transporter 2696 49.41 0 3267500..3267922 - 140 157375837 - Ssed_2702 - GCN5-related N-acetyltransferase 2697 45.93 0 3268033..3268548 - 171 157375838 - Ssed_2703 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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