version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2247 41.41 -1 2715165..2715548 + 127 157375388 - Ssed_2251 - hypothetical protein 2248 43.80 0 2715661..2716023 - 120 157375389 - Ssed_2252 - globin 2249 40.96 -1 2716270..2717502 - 410 157375390 - Ssed_2253 - patatin 2250 43.50 0 2718274..2719542 + 422 157375391 - Ssed_2254 - sensory box protein 2251 45.48 0 2719824..2722886 - 1020 157375392 - Ssed_2255 - UvrD/REP helicase 2252 47.95 0 2723406..2724185 - 259 157375393 - Ssed_2256 - negative regulator of beta-lactamase expression-like protein 2253 43.70 0 2724481..2725734 - 417 157375394 - Ssed_2257 - metal dependent phosphohydrolase 2254 48.04 0 2726434..2727324 - 296 157375395 - Ssed_2258 - transcriptional regulator 2255 47.73 0 2727459..2728715 + 418 157375396 - Ssed_2259 - adenylosuccinate synthase 2256 43.06 0 2729564..2730622 - 352 157375397 - Ssed_2260 - iron-regulated membrane protein-like protein 2257 42.52 -1 2731877..2732692 + 271 157375398 - Ssed_2261 - sulfurtransferase 2258 50.30 0 2732878..2734032 + 384 157375399 - Ssed_2262 - glucose dehydrogenase 2259 37.51 -2 2734272..2735948 - 558 157375400 - Ssed_2263 - AMP-dependent synthetase and ligase 2260 46.49 0 2736662..2737786 - 374 157375401 - Ssed_2264 - HNH nuclease 2261 48.76 0 2737783..2738469 - 228 157375402 - Ssed_2265 - methyltransferase type 12 2262 36.64 -2 2738810..2740591 - 593 157375403 - Ssed_2266 - hypothetical protein 2263 39.49 -1 2740758..2741033 - 91 157375404 - Ssed_2267 - hypothetical protein 2264 44.75 0 2741100..2742089 - 329 157375405 - Ssed_2268 - ADP-ribosylation/crystallin J1 2265 39.18 -2 2742314..2742775 - 153 157375406 - Ssed_2269 - hypothetical protein 2266 42.27 -1 2742765..2744129 - 454 157375407 - Ssed_2270 - hypothetical protein 2267 40.85 -1 2744155..2744553 - 132 157375408 - Ssed_2271 - hypothetical protein 2268 49.49 0 2744788..2745567 - 259 157375409 - Ssed_2272 - hypothetical protein 2269 54.17 +2 2745709..2749302 - 1197 157375410 - Ssed_2273 - putative pyruvate oxidoreductase 2270 54.57 +2 2749344..2750972 - 542 157375411 - Ssed_2274 - putative glutamate synthase (NADPH) small subunit 2271 47.62 0 2751280..2752308 - 342 157375412 - Ssed_2275 - hypothetical protein 2272 47.31 0 2752889..2753632 + 247 157375413 - Ssed_2276 - hypothetical protein 2273 47.50 0 2753629..2755548 + 639 157375414 - Ssed_2277 - Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF 2274 46.21 0 2755703..2756743 - 346 157375415 - Ssed_2278 - porin 2275 44.62 0 2756824..2758170 - 448 157375416 - Ssed_2279 - FMN-binding domain-containing protein 2276 43.07 0 2758517..2759635 + 372 157375417 - Ssed_2280 - ApbE family lipoprotein 2277 46.21 0 2760044..2761720 + 558 157375418 - Ssed_2281 - histidine kinase 2278 46.17 0 2761713..2762312 + 199 157375419 - Ssed_2282 - two component LuxR family transcriptional regulator 2279 50.13 0 2762917..2764422 - 501 157375420 - Ssed_2283 - outer membrane efflux protein 2280 51.61 +1 2764422..2767589 - 1055 157375421 - Ssed_2284 - acriflavin resistance protein 2281 48.64 0 2767589..2768875 - 428 157375422 - Ssed_2285 - RND family efflux transporter MFP subunit 2282 45.83 0 2769241..2769984 - 247 157375423 - Ssed_2286 - DTW domain-containing protein 2283 51.02 +1 2770648..2771874 + 408 157375424 - Ssed_2287 - multidrug resistance protein D 2284 45.74 0 2772391..2773704 - 437 157375425 - Ssed_2288 - phosphatidylserine synthase 2285 44.74 0 2773716..2774048 - 110 157375426 - Ssed_2289 - hypothetical protein 2286 41.95 -1 2774408..2774581 + 57 157375427 - Ssed_2290 - hypothetical protein 2287 44.17 0 2774783..2776240 + 485 157375428 - Ssed_2291 - Serine-type D-Ala-D-Ala carboxypeptidase 2288 48.52 0 2776424..2778181 - 585 157375429 - Ssed_2292 - acyl-CoA dehydrogenase domain-containing protein 2289 45.67 0 2778421..2778963 - 180 157375430 - Ssed_2293 - hypothetical protein 2290 47.23 0 2779074..2779778 - 234 157375431 - Ssed_2294 - orotidine-5'-phosphate decarboxylase 2291 47.80 0 2779883..2781043 - 386 157375432 - Ssed_2295 - hypothetical protein 2292 37.80 -2 2781045..2781335 - 96 157375433 - Ssed_2296 - hypothetical protein 2293 46.53 0 2781458..2781745 - 95 157375434 - Ssed_2297 - integration host factor, beta subunit 2294 44.18 0 2781817..2783484 - 555 157375435 - Ssed_2298 - 30S ribosomal protein S1 2295 47.91 0 2783587..2784279 - 230 157375436 - Ssed_2299 - cytidylate kinase 2296 48.01 0 2784568..2785848 - 426 157375437 - Ssed_2300 - 3-phosphoshikimate 1-carboxyvinyltransferase 2297 47.51 0 2786298..2787503 + 401 157375438 - Ssed_2301 - aromatic amino acid aminotransferase 2298 45.39 0 2787554..2788648 - 364 157375439 - Ssed_2302 - phosphoserine aminotransferase 2299 46.78 0 2788824..2791538 - 904 157375440 - Ssed_2303 - DNA topoisomerase (ATP-hydrolyzing) 2300 44.63 0 2791824..2792549 + 241 157375441 - Ssed_2304 - 3-demethylubiquinone-9 3-methyltransferase 2301 49.50 0 2792550..2793254 + 234 157375442 - Ssed_2305 - HAD family hydrolase 2302 46.61 0 2793669..2795957 + 762 157375443 - Ssed_2306 - ribonucleotide-diphosphate reductase subunit alpha 2303 44.30 0 2796104..2797234 + 376 157375444 - Ssed_2307 - ribonucleotide-diphosphate reductase subunit beta 2304 47.29 0 2797218..2797568 + 116 157375445 - Ssed_2308 - ferredoxin 2305 47.81 0 2797887..2799530 + 547 157375446 - Ssed_2309 - methyl-accepting chemotaxis protein-like protein 2306 49.60 0 2799628..2801643 - 671 157375447 - Ssed_2310 - NADH:flavin oxidoreductase/NADH oxidase 2307 48.45 0 2801807..2803645 + 612 157375448 - Ssed_2311 - acid phosphatase 2308 47.14 0 2803811..2804824 + 337 157375449 - Ssed_2312 - cytoplasmic asparaginase I 2309 43.26 0 2804996..2805277 - 93 157375450 - Ssed_2313 - hypothetical protein 2310 44.65 0 2805274..2805591 - 105 157375451 - Ssed_2314 - hypothetical protein 2311 46.28 0 2805664..2806791 - 375 157375452 - Ssed_2315 - peptidase M14, carboxypeptidase A 2312 40.82 -1 2807019..2807699 - 226 157375453 - Ssed_2316 - response regulator receiver protein 2313 46.15 0 2807920..2809698 - 592 157375454 - Ssed_2317 - hypothetical protein 2314 47.30 0 2809881..2811827 - 648 157375455 - Ssed_2318 - 23S rRNA (Gm2251)-methyltransferase 2315 44.68 0 2812011..2812865 - 284 157375456 - Ssed_2319 - endonuclease/exonuclease/phosphatase 2316 47.52 0 2813076..2814548 + 490 157375457 - Ssed_2320 - cardiolipin synthetase 2317 43.42 0 2815228..2817111 + 627 157375458 - Ssed_2321 - nucleotidyltransferase 2318 43.10 0 2817115..2817831 + 238 157375459 - Ssed_2322 - DNA polymerase III subunit epsilon 2319 44.36 0 2817938..2819515 - 525 157375460 - Ssed_2323 - glycine betaine transporter 2320 43.43 0 2819755..2820735 - 326 157375461 - Ssed_2324 - NAD+ synthetase 2321 46.42 0 2821094..2823088 - 664 157375462 - Ssed_2325 - methyl-accepting chemotaxis sensory transducer 2322 49.63 0 2823258..2824325 - 355 157375463 - Ssed_2326 - quinolinate synthetase 2323 49.30 0 2824454..2826088 - 544 157375464 - Ssed_2327 - dihydrolipoamide acetyltransferase 2324 47.44 0 2826099..2827076 - 325 157375465 - Ssed_2328 - transketolase, central region 2325 47.07 0 2827080..2828258 - 392 157375466 - Ssed_2329 - 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) 2326 43.10 0 2828478..2829521 - 347 157375467 - Ssed_2330 - succinylglutamate desuccinylase 2327 45.83 0 2829819..2830298 + 159 157375468 - Ssed_2331 - peptide methionine sulfoxide reductase 2328 47.95 0 2830647..2832302 - 551 157375469 - Ssed_2332 - phosphoglucomutase 2329 44.94 0 2832381..2832923 - 180 157375470 - Ssed_2333 - replication initiation regulator SeqA 2330 45.95 0 2833215..2833991 + 258 157375471 - Ssed_2334 - alpha/beta hydrolase fold 2331 38.74 -2 2834064..2834285 + 73 157375472 - Ssed_2335 - hypothetical protein 2332 43.48 0 2834297..2834572 + 91 157375473 - Ssed_2336 - LexA regulated protein 2333 46.33 0 2834621..2835151 + 176 157375474 - Ssed_2337 - flavodoxin 2334 44.19 0 2835236..2836414 + 392 157375475 - Ssed_2338 - hypothetical protein 2335 44.39 0 2836460..2837020 + 186 157375476 - Ssed_2339 - elongation factor P 2336 47.41 0 2837310..2838524 + 404 157375477 - Ssed_2340 - aminotransferase AlaT 2337 47.67 0 2838578..2839630 - 350 157375478 - Ssed_2341 - galactose-1-phosphate uridylyltransferase 2338 49.52 0 2839803..2848241 - 2812 157375479 - Ssed_2342 - putative outer membrane adhesin like proteiin 2339 49.02 0 2848787..2850820 - 677 157375480 - Ssed_2343 - hypothetical protein 2340 43.38 0 2851080..2851955 - 291 157375481 - Ssed_2344 - AraC family transcriptional regulator 2341 43.37 0 2852145..2852732 + 195 157375482 - Ssed_2345 - hypothetical protein 2342 48.31 0 2852754..2854088 + 444 157375483 - Ssed_2346 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 2343 45.51 0 2854158..2854847 - 229 157375484 - Ssed_2347 - UbiE/COQ5 methyltransferase 2344 44.87 0 2855422..2856054 - 210 157375485 - Ssed_2348 - hypothetical protein 2345 46.37 0 2856379..2858979 + 866 157375486 - Ssed_2349 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2346 45.41 0 2859074..2859868 - 264 157375487 - Ssed_2350 - hypothetical protein 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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