version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2155 53.12 +1 2612336..2612977 - 213 157375296 - Ssed_2159 - hypothetical protein 2156 51.50 +1 2612974..2613540 - 188 157375297 - Ssed_2160 - cobinamide kinase; cobinamide phosphate guanylyltransferase CobU 2157 50.22 0 2613537..2614436 - 299 157375298 - Ssed_2161 - periplasmic binding protein 2158 51.52 +1 2614437..2614964 - 175 157375299 - Ssed_2162 - cobalbumin biosynthesis enzyme 2159 54.50 +2 2614965..2615975 - 336 157375300 - Ssed_2163 - transport system permease protein 2160 48.46 0 2615962..2616774 - 270 157375301 - Ssed_2164 - ABC transporter related 2161 49.43 0 2616832..2618682 - 616 157375302 - Ssed_2165 - TonB-dependent vitamin B12 receptor 2162 48.88 0 2619453..2622635 - 1060 157375303 - Ssed_2166 - acriflavin resistance protein 2163 47.61 0 2622639..2623829 - 396 157375304 - Ssed_2167 - RND family efflux transporter MFP subunit 2164 49.25 0 2624216..2625214 - 332 157375305 - Ssed_2168 - hypothetical protein 2165 44.00 0 2625656..2626030 + 124 157375306 - Ssed_2169 - hypothetical protein 2166 43.22 0 2626294..2626647 + 117 157375307 - Ssed_2170 - nitrogen regulatory protein PII 2167 52.87 +1 2626778..2628031 - 417 157375308 - Ssed_2171 - DNA-directed DNA polymerase 2168 48.83 0 2628167..2628592 - 141 157375309 - Ssed_2172 - SOS-response transcriptional repressor LexA -like protein 2169 46.80 0 2628767..2629687 + 306 157375310 - Ssed_2173 - putative manganese-dependent inorganic pyrophosphatase 2170 50.54 +1 2629931..2631697 + 588 157375311 - Ssed_2174 - acetyl-CoA synthetase 2171 49.80 0 2631694..2632689 + 331 157375312 - Ssed_2175 - pyruvate dehydrogenase (acetyl-transferring) 2172 52.74 +1 2632686..2633669 + 327 157375313 - Ssed_2176 - pyruvate dehydrogenase complex, E1 beta2 component 2173 48.85 0 2633705..2634838 + 377 157375314 - Ssed_2177 - dehydrogenase catalytic domain-containing protein 2174 37.80 -2 2634835..2635080 + 81 157375315 - Ssed_2178 - phosphopantetheine-binding protein 2175 50.57 +1 2635321..2635761 + 146 157375316 - Ssed_2179 - universal stress protein 2176 47.61 0 2635886..2638309 - 807 157375317 - Ssed_2180 - putative ATP-dependent protease La-relatedprotein 2177 44.95 0 2638620..2639213 - 197 157375318 - Ssed_2181 - hypothetical protein 2178 44.66 0 2639520..2640437 + 305 157375319 - Ssed_2182 - diguanylate cyclase with PAS/PAC sensor 2179 51.95 +1 2640602..2641267 + 221 157375320 - Ssed_2183 - putative short-chain dehydrogenase 2180 47.85 0 2641354..2643117 - 587 157375321 - Ssed_2184 - hypothetical protein 2181 51.91 +1 2645827..2646009 - 60 157375322 - Ssed_2185 - hypothetical protein 2182 42.12 -1 2646655..2647257 + 200 157375323 - Ssed_2186 - hydrolase 2183 39.68 -1 2647605..2647919 - 104 157375324 - Ssed_2187 - hypothetical protein 2184 40.10 -1 2648346..2648759 - 137 157375325 - Ssed_2188 - hypothetical protein 2185 42.26 -1 2648934..2649269 + 111 157375326 - Ssed_2189 - HxlR family transcriptional regulator 2186 44.57 0 2650865..2651131 + 88 157375327 - Ssed_2190 - hypothetical protein 2187 35.66 -2 2651277..2651534 + 85 157375328 - Ssed_2191 - hypothetical protein 2188 45.01 0 2651696..2653519 + 607 157375329 - Ssed_2192 - hypothetical protein 2189 41.94 -1 2654110..2654388 + 92 157375330 - Ssed_2193 - hypothetical protein 2190 46.01 0 2654370..2654732 + 120 157375331 - Ssed_2194 - hypothetical protein 2191 48.45 0 2654733..2655314 + 193 157375332 - Ssed_2195 - hypothetical protein 2192 47.01 0 2655292..2655993 + 233 157375333 - Ssed_2196 - hypothetical protein 2193 43.22 0 2656343..2657161 + 272 157375334 - Ssed_2197 - hypothetical protein 2194 46.41 0 2657172..2657477 + 101 157375335 - Ssed_2198 - hypothetical protein 2195 44.26 0 2657757..2658122 + 121 157375336 - Ssed_2199 - hypothetical protein 2196 45.71 0 2658122..2658913 + 263 157375337 - Ssed_2200 - hypothetical protein 2197 46.19 0 2658910..2660418 + 502 157375338 - Ssed_2201 - hypothetical protein 2198 46.96 0 2660418..2661041 + 207 157375339 - Ssed_2202 - hypothetical protein 2199 43.70 0 2661016..2661372 + 118 157375340 - Ssed_2203 - hypothetical protein 2200 45.87 0 2661416..2661742 + 108 157375341 - Ssed_2204 - hypothetical protein 2201 41.67 -1 2662296..2662955 + 219 157375342 - Ssed_2205 - hypothetical protein 2202 44.86 0 2663053..2663538 - 161 157375343 - Ssed_2206 - hypothetical protein 2203 46.79 0 2664796..2666088 - 430 157375344 - Ssed_2207 - phage integrase family protein 2204 40.28 -1 2666280..2666567 - 95 157375345 - Ssed_2208 - hypothetical protein 2205 44.40 0 2666770..2668350 + 526 157375346 - Ssed_2209 - response regulator receiver modulated metal dependent phosphohydrolase 2206 39.91 -1 2668465..2668890 - 141 157375347 - Ssed_2210 - hypothetical protein 2207 45.73 0 2669201..2670628 + 475 157375348 - Ssed_2211 - cytochrome c oxidase, cbb3-type, subunit I 2208 45.77 0 2670641..2671267 + 208 157375349 - Ssed_2212 - cytochrome c oxidase, cbb3-type, subunit II 2209 38.69 -2 2671283..2671450 + 55 157375350 - Ssed_2213 - Cbb3-type cytochrome oxidase component 2210 45.51 0 2671450..2672418 + 322 157375351 - Ssed_2214 - cytochrome c oxidase, cbb3-type, subunit III 2211 41.04 -1 2672529..2673008 + 159 157375352 - Ssed_2215 - hypothetical protein 2212 47.25 0 2673026..2675404 + 792 157375353 - Ssed_2216 - heavy metal translocating P-type ATPase 2213 39.78 -1 2675401..2675586 + 61 157375354 - Ssed_2217 - cytochrome oxidase maturation protein, cbb3-type 2214 46.75 0 2675583..2676275 + 230 157375355 - Ssed_2218 - hypothetical protein 2215 43.47 0 2676331..2677080 + 249 157375356 - Ssed_2219 - fumarate/nitrate reduction transcriptional regulator 2216 45.98 0 2677419..2678351 + 310 157375357 - Ssed_2220 - universal stress protein UspE 2217 46.27 0 2678431..2679381 + 316 157375358 - Ssed_2221 - PP-loop domain-containing protein 2218 44.34 0 2679494..2680120 - 208 157375359 - Ssed_2222 - hypothetical protein 2219 43.12 0 2680098..2680925 - 275 157375360 - Ssed_2223 - Bax protein, putative 2220 48.00 0 2681062..2681961 + 299 157375361 - Ssed_2224 - protein of unknown function UPF0052 and CofD 2221 44.78 0 2682061..2683257 - 398 157375362 - Ssed_2225 - aromatic amino acid aminotransferase 2222 43.96 0 2685384..2686823 - 479 157375363 - Ssed_2226 - glyceraldehyde-3-phosphate dehydrogenase 2223 39.47 -1 2687047..2687877 + 276 157375364 - Ssed_2227 - hypothetical protein 2224 42.24 -1 2688299..2689309 + 336 157375365 - Ssed_2228 - glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) 2225 40.95 -1 2689445..2690848 - 467 157375366 - Ssed_2229 - GGDEF domain-containing protein 2226 39.28 -2 2691243..2691713 + 156 157375367 - Ssed_2230 - bacterioferritin 2227 42.86 -1 2691715..2692197 + 160 157375368 - Ssed_2231 - bacterioferritin 2228 46.67 0 2692328..2692717 - 129 157375369 - Ssed_2232 - hypothetical protein 2229 39.86 -1 2692972..2693247 - 91 157375370 - Ssed_2233 - hypothetical protein 2230 43.03 0 2693425..2694558 + 377 157375371 - Ssed_2234 - spermidine/putrescine-binding periplasmic protein-like protein 2231 47.25 0 2694574..2695917 - 447 157375372 - Ssed_2235 - FAD dependent oxidoreductase 2232 44.75 0 2695933..2696484 - 183 157375373 - Ssed_2236 - GCN5-related N-acetyltransferase 2233 44.58 0 2696691..2698388 + 565 157375374 - Ssed_2237 - MutT/NUDIX family protein 2234 40.60 -1 2698600..2699658 + 352 157375375 - Ssed_2238 - hypothetical protein 2235 47.41 0 2699729..2700424 - 231 157375376 - Ssed_2239 - short chain dehydrogenase 2236 37.28 -2 2700473..2700877 - 134 157375377 - Ssed_2240 - putative orphan protein 2237 45.43 0 2701332..2702381 + 349 157375378 - Ssed_2241 - hypothetical protein 2238 43.49 0 2702898..2703872 + 324 157375379 - Ssed_2242 - ABC-type sugar transport system, ATPase component 2239 37.52 -2 2703964..2704488 - 174 157375380 - Ssed_2243 - hypothetical protein 2240 44.71 0 2705314..2706456 + 380 157375381 - Ssed_2244 - phage integrase family protein 2241 44.22 0 2706535..2708325 - 596 157375382 - Ssed_2245 - amidohydrolase 3 2242 42.22 -1 2708472..2709518 - 348 157375383 - Ssed_2246 - aminoglycoside phosphotransferase 2243 47.12 0 2709554..2710786 - 410 157375384 - Ssed_2247 - putative aminotransferase 2244 48.07 0 2710844..2713177 - 777 157375385 - Ssed_2248 - TonB-dependent receptor 2245 44.96 0 2713427..2714071 + 214 157375386 - Ssed_2249 - TetR family transcriptional regulator 2246 45.33 0 2714213..2714929 - 238 157375387 - Ssed_2250 - pseudouridine synthase 2247 41.41 -1 2715165..2715548 + 127 157375388 - Ssed_2251 - hypothetical protein 2248 43.80 0 2715661..2716023 - 120 157375389 - Ssed_2252 - globin 2249 40.96 -1 2716270..2717502 - 410 157375390 - Ssed_2253 - patatin 2250 43.50 0 2718274..2719542 + 422 157375391 - Ssed_2254 - sensory box protein 2251 45.48 0 2719824..2722886 - 1020 157375392 - Ssed_2255 - UvrD/REP helicase 2252 47.95 0 2723406..2724185 - 259 157375393 - Ssed_2256 - negative regulator of beta-lactamase expression-like protein 2253 43.70 0 2724481..2725734 - 417 157375394 - Ssed_2257 - metal dependent phosphohydrolase 2254 48.04 0 2726434..2727324 - 296 157375395 - Ssed_2258 - transcriptional regulator 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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