version 1.0
Shewanella sediminis HAW-EB3, complete genome - 1..5517674 4497 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2111 46.97 0 2560368..2562017 - 549 157375252 - Ssed_2115 - ABC transporter ATPase 2112 45.31 0 2562300..2562800 + 166 157375253 - Ssed_2116 - hypothetical protein 2113 44.52 0 2564557..2565933 - 458 157375254 - Ssed_2117 - MATE efflux family protein 2114 42.02 -1 2565948..2566580 + 210 157375255 - Ssed_2118 - riboflavin synthase subunit alpha 2115 41.29 -1 2566622..2566822 - 66 157375256 - Ssed_2119 - hypothetical protein 2116 44.38 0 2567679..2569607 + 642 157375257 - Ssed_2120 - threonyl-tRNA synthetase 2117 41.67 -1 2569818..2570153 + 111 157375258 - Ssed_2121 - translation initiation factor IF-3 2118 42.05 -1 2570237..2570431 + 64 157375259 - Ssed_2122 - 50S ribosomal protein L35 2119 41.39 -1 2570450..2570809 + 119 157375260 - Ssed_2123 - 50S ribosomal protein L20 2120 46.27 0 2571083..2572033 - 316 157375261 - Ssed_2124 - thioredoxin reductase 2121 46.15 0 2572169..2573284 - 371 157375262 - Ssed_2125 - alanine dehydrogenase 2122 38.10 -2 2573465..2573968 + 167 157375263 - Ssed_2126 - leucine-responsive transcriptional regulator 2123 46.86 0 2574152..2576665 + 837 157375264 - Ssed_2127 - cell division protein FtsK/SpoIIIE 2124 44.50 0 2576780..2577406 + 208 157375265 - Ssed_2128 - outer membrane lipoprotein carrier protein LolA 2125 49.10 0 2577416..2578747 + 443 157375266 - Ssed_2129 - recombination factor protein RarA 2126 41.33 -1 2578740..2579114 + 124 157375267 - Ssed_2130 - CrcB protein 2127 45.77 0 2579133..2580419 + 428 157375268 - Ssed_2131 - seryl-tRNA synthetase 2128 45.54 0 2580854..2581189 - 111 157375269 - Ssed_2132 - DsrC family protein 2129 44.91 0 2581300..2581515 - 71 157375270 - Ssed_2133 - DsrH family protein 2130 46.46 0 2581581..2581961 - 126 157375271 - Ssed_2134 - DsrE family protein 2131 46.92 0 2582008..2582397 - 129 157375272 - Ssed_2135 - DsrE family protein 2132 44.09 0 2582563..2583222 - 219 157375273 - Ssed_2136 - hypothetical protein 2133 46.95 0 2583472..2584374 - 300 157375274 - Ssed_2137 - putative DNA-binding transcriptional regulator 2134 43.48 0 2584412..2585752 + 446 157375275 - Ssed_2138 - inner membrane transport protein YdhC 2135 48.81 0 2586794..2588008 - 404 157375276 - Ssed_2139 - hypothetical protein 2136 47.31 0 2588337..2590211 - 624 157375277 - Ssed_2140 - hypothetical protein 2137 41.49 -1 2590323..2591156 + 277 157375278 - Ssed_2141 - hypothetical protein 2138 45.67 0 2591241..2592002 - 253 157375279 - Ssed_2142 - hypothetical protein 2139 49.34 0 2592192..2594090 - 632 157375280 - Ssed_2143 - hypothetical protein 2140 45.67 0 2594437..2595198 - 253 157375281 - Ssed_2144 - hypothetical protein 2141 47.80 0 2595356..2597311 - 651 157375282 - Ssed_2145 - hypothetical protein 2142 52.01 +1 2597657..2598550 - 297 157375283 - Ssed_2146 - ABC-type Fe3+-hydroxamate transport system periplasmic component-like protein 2143 48.81 0 2598738..2599622 + 294 157375284 - Ssed_2147 - ABC transporter, ATP-binding protein 2144 50.71 +1 2599619..2600602 + 327 157375285 - Ssed_2148 - putative ABC transporter, permease protein 2145 47.76 0 2600895..2601809 + 304 157375286 - Ssed_2149 - cytochrome c family protein 2146 48.36 0 2601821..2603830 + 669 157375287 - Ssed_2150 - outer membrane protein 2147 41.60 -1 2604163..2604561 + 132 157375288 - Ssed_2151 - transporter 2148 44.26 0 2605004..2605909 + 301 157375289 - Ssed_2152 - hypothetical protein 2149 46.31 0 2606044..2607060 - 338 157375290 - Ssed_2153 - hypothetical protein 2150 53.68 +1 2607087..2607671 - 194 157375291 - Ssed_2154 - Cob(I)yrinic acid a,c-diamide adenosyltransferase 2151 54.05 +1 2607668..2608444 - 258 157375292 - Ssed_2155 - cobalamin 5'-phosphate synthase 2152 52.82 +1 2608441..2609805 - 454 157375293 - Ssed_2156 - hypothetical protein 2153 52.61 +1 2609805..2611262 - 485 157375294 - Ssed_2157 - cobyric acid synthase 2154 50.42 +1 2611259..2612335 - 358 157375295 - Ssed_2158 - hypothetical protein 2155 53.12 +1 2612336..2612977 - 213 157375296 - Ssed_2159 - hypothetical protein 2156 51.50 +1 2612974..2613540 - 188 157375297 - Ssed_2160 - cobinamide kinase; cobinamide phosphate guanylyltransferase CobU 2157 50.22 0 2613537..2614436 - 299 157375298 - Ssed_2161 - periplasmic binding protein 2158 51.52 +1 2614437..2614964 - 175 157375299 - Ssed_2162 - cobalbumin biosynthesis enzyme 2159 54.50 +2 2614965..2615975 - 336 157375300 - Ssed_2163 - transport system permease protein 2160 48.46 0 2615962..2616774 - 270 157375301 - Ssed_2164 - ABC transporter related 2161 49.43 0 2616832..2618682 - 616 157375302 - Ssed_2165 - TonB-dependent vitamin B12 receptor 2162 48.88 0 2619453..2622635 - 1060 157375303 - Ssed_2166 - acriflavin resistance protein 2163 47.61 0 2622639..2623829 - 396 157375304 - Ssed_2167 - RND family efflux transporter MFP subunit 2164 49.25 0 2624216..2625214 - 332 157375305 - Ssed_2168 - hypothetical protein 2165 44.00 0 2625656..2626030 + 124 157375306 - Ssed_2169 - hypothetical protein 2166 43.22 0 2626294..2626647 + 117 157375307 - Ssed_2170 - nitrogen regulatory protein PII 2167 52.87 +1 2626778..2628031 - 417 157375308 - Ssed_2171 - DNA-directed DNA polymerase 2168 48.83 0 2628167..2628592 - 141 157375309 - Ssed_2172 - SOS-response transcriptional repressor LexA -like protein 2169 46.80 0 2628767..2629687 + 306 157375310 - Ssed_2173 - putative manganese-dependent inorganic pyrophosphatase 2170 50.54 +1 2629931..2631697 + 588 157375311 - Ssed_2174 - acetyl-CoA synthetase 2171 49.80 0 2631694..2632689 + 331 157375312 - Ssed_2175 - pyruvate dehydrogenase (acetyl-transferring) 2172 52.74 +1 2632686..2633669 + 327 157375313 - Ssed_2176 - pyruvate dehydrogenase complex, E1 beta2 component 2173 48.85 0 2633705..2634838 + 377 157375314 - Ssed_2177 - dehydrogenase catalytic domain-containing protein 2174 37.80 -2 2634835..2635080 + 81 157375315 - Ssed_2178 - phosphopantetheine-binding protein 2175 50.57 +1 2635321..2635761 + 146 157375316 - Ssed_2179 - universal stress protein 2176 47.61 0 2635886..2638309 - 807 157375317 - Ssed_2180 - putative ATP-dependent protease La-relatedprotein 2177 44.95 0 2638620..2639213 - 197 157375318 - Ssed_2181 - hypothetical protein 2178 44.66 0 2639520..2640437 + 305 157375319 - Ssed_2182 - diguanylate cyclase with PAS/PAC sensor 2179 51.95 +1 2640602..2641267 + 221 157375320 - Ssed_2183 - putative short-chain dehydrogenase 2180 47.85 0 2641354..2643117 - 587 157375321 - Ssed_2184 - hypothetical protein 2181 51.91 +1 2645827..2646009 - 60 157375322 - Ssed_2185 - hypothetical protein 2182 42.12 -1 2646655..2647257 + 200 157375323 - Ssed_2186 - hydrolase 2183 39.68 -1 2647605..2647919 - 104 157375324 - Ssed_2187 - hypothetical protein 2184 40.10 -1 2648346..2648759 - 137 157375325 - Ssed_2188 - hypothetical protein 2185 42.26 -1 2648934..2649269 + 111 157375326 - Ssed_2189 - HxlR family transcriptional regulator 2186 44.57 0 2650865..2651131 + 88 157375327 - Ssed_2190 - hypothetical protein 2187 35.66 -2 2651277..2651534 + 85 157375328 - Ssed_2191 - hypothetical protein 2188 45.01 0 2651696..2653519 + 607 157375329 - Ssed_2192 - hypothetical protein 2189 41.94 -1 2654110..2654388 + 92 157375330 - Ssed_2193 - hypothetical protein 2190 46.01 0 2654370..2654732 + 120 157375331 - Ssed_2194 - hypothetical protein 2191 48.45 0 2654733..2655314 + 193 157375332 - Ssed_2195 - hypothetical protein 2192 47.01 0 2655292..2655993 + 233 157375333 - Ssed_2196 - hypothetical protein 2193 43.22 0 2656343..2657161 + 272 157375334 - Ssed_2197 - hypothetical protein 2194 46.41 0 2657172..2657477 + 101 157375335 - Ssed_2198 - hypothetical protein 2195 44.26 0 2657757..2658122 + 121 157375336 - Ssed_2199 - hypothetical protein 2196 45.71 0 2658122..2658913 + 263 157375337 - Ssed_2200 - hypothetical protein 2197 46.19 0 2658910..2660418 + 502 157375338 - Ssed_2201 - hypothetical protein 2198 46.96 0 2660418..2661041 + 207 157375339 - Ssed_2202 - hypothetical protein 2199 43.70 0 2661016..2661372 + 118 157375340 - Ssed_2203 - hypothetical protein 2200 45.87 0 2661416..2661742 + 108 157375341 - Ssed_2204 - hypothetical protein 2201 41.67 -1 2662296..2662955 + 219 157375342 - Ssed_2205 - hypothetical protein 2202 44.86 0 2663053..2663538 - 161 157375343 - Ssed_2206 - hypothetical protein 2203 46.79 0 2664796..2666088 - 430 157375344 - Ssed_2207 - phage integrase family protein 2204 40.28 -1 2666280..2666567 - 95 157375345 - Ssed_2208 - hypothetical protein 2205 44.40 0 2666770..2668350 + 526 157375346 - Ssed_2209 - response regulator receiver modulated metal dependent phosphohydrolase 2206 39.91 -1 2668465..2668890 - 141 157375347 - Ssed_2210 - hypothetical protein 2207 45.73 0 2669201..2670628 + 475 157375348 - Ssed_2211 - cytochrome c oxidase, cbb3-type, subunit I 2208 45.77 0 2670641..2671267 + 208 157375349 - Ssed_2212 - cytochrome c oxidase, cbb3-type, subunit II 2209 38.69 -2 2671283..2671450 + 55 157375350 - Ssed_2213 - Cbb3-type cytochrome oxidase component 2210 45.51 0 2671450..2672418 + 322 157375351 - Ssed_2214 - cytochrome c oxidase, cbb3-type, subunit III 46.69 MEAN 3.68 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0